3TMH | pdb_00003tmh

Crystal structure of dual-specific A-kinase anchoring protein 2 in complex with cAMP-dependent protein kinase A type II alpha and PDZK1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Dpy-30/Rlla-like	8042459	3001874	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dpy-30/Rlla-like	8042459	3001874	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dpy-30/Rlla-like	8042459	3001874	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	PDZ	e3tmhI1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
E	PDZ	e3tmhE1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
A	PDZ	e3tmhA1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
G	RIIa	e3tmhG1	A: alpha duplicates or obligate multimers	X: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	H: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	T: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	F: RIIa	ECOD (1.6)
F	RIIa	e3tmhF1	A: alpha duplicates or obligate multimers	X: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	H: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	T: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	F: RIIa	ECOD (1.6)
C	RIIa	e3tmhC1	A: alpha duplicates or obligate multimers	X: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	H: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	T: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	F: RIIa	ECOD (1.6)
B	RIIa	e3tmhB1	A: alpha duplicates or obligate multimers	X: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	H: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	T: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	F: RIIa	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
E	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, E, I	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain
B, C, F, G	PF02197	Regulatory subunit of type II PKA R-subunit (RIIa)	Regulatory subunit of type II PKA R-subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E, I	Na(+)/H(+) exchange regulatory cofactor NHE-RF3	protein binding binding signaling receptor binding protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity transporter activator activity molecular function activator activity molecular function regulator activity transporter regulator activity protein-containing complex binding PDZ domain binding protein domain specific binding scavenger receptor binding	quaternary ammonium group transport nitrogen compound transport transport carnitine transport establishment of localization organic cation transport transmembrane transport localization carnitine transmembrane transport cellular process modified amino acid transport amino-acid betaine transport regulation of localization regulation of biological process quaternary ammonium group transport nitrogen compound transport transport carnitine transport establishment of localization organic cation transport transmembrane transport localization carnitine transmembrane transport cellular process modified amino acid transport amino-acid betaine transport regulation of localization regulation of biological process regulation of transport regulation of monoatomic ion transport biological regulation regulation of monoatomic anion transport monoatomic anion transport monoatomic ion transport protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane establishment of protein localization regulation of cellular process regulation of protein localization protein targeting positive regulation of biological process positive regulation of establishment of protein localization regulation of protein targeting to membrane positive regulation of cellular process establishment of protein localization to membrane regulation of establishment of protein localization protein targeting to membrane regulation of cellular localization regulation of protein targeting positive regulation of protein targeting to membrane xenobiotic export from cell xenobiotic transport response to stimulus xenobiotic detoxification by transmembrane export across the plasma membrane detoxification export from cell export across plasma membrane response to toxic substance response to chemical positive regulation of protein localization to membrane positive regulation of protein localization regulation of protein localization to membrane	cell periphery cellular anatomical structure apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cell periphery cellular anatomical structure apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle plasma membrane bounded cell projection cell projection actin-based cell projection microvillus microvillus membrane cell projection membrane brush border membrane cluster of actin-based cell projections brush border
D, H, J [auth L]	A-kinase anchor protein 10, mitochondrial	protein kinase A binding protein binding binding	localization macromolecule localization intracellular protein localization cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle cell periphery plasma membrane membrane protein-containing complex
B, C, F, G	cAMP-dependent protein kinase type II-alpha regulatory subunit	protein binding binding protein domain specific binding enzyme regulator activity enzyme inhibitor activity protein kinase regulator activity cAMP-dependent protein kinase regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity cAMP-dependent protein kinase inhibitor activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity protein binding binding protein domain specific binding enzyme regulator activity enzyme inhibitor activity protein kinase regulator activity cAMP-dependent protein kinase regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity cAMP-dependent protein kinase inhibitor activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity beta-2 adrenergic receptor binding adrenergic receptor binding signaling receptor binding G protein-coupled receptor binding small molecule binding adenyl ribonucleotide binding cyclic nucleotide binding nucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cAMP binding adenyl nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding protein-containing complex binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding protein kinase A catalytic subunit binding protein kinase A binding kinase binding protein kinase binding identical protein binding	positive regulation of meiotic cell cycle process involved in oocyte maturation regulation of cellular process meiotic cell cycle process involved in oocyte maturation sexual reproduction cellular developmental process regulation of reproductive process reproductive process positive regulation of biological process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation meiotic cell cycle process gamete generation oocyte development positive regulation of meiotic cell cycle process involved in oocyte maturation regulation of cellular process meiotic cell cycle process involved in oocyte maturation sexual reproduction cellular developmental process regulation of reproductive process reproductive process positive regulation of biological process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation meiotic cell cycle process gamete generation oocyte development cell differentiation anatomical structure development positive regulation of cell cycle process cell cycle cell maturation regulation of cell cycle positive regulation of cellular process cell cycle process positive regulation of reproductive process developmental process regulation of biological process regulation of meiotic cell cycle regulation of cell cycle process meiotic cell cycle biological regulation multicellular organismal reproductive process oogenesis positive regulation of meiotic cell cycle regulation of meiotic cell cycle process involved in oocyte maturation developmental maturation positive regulation of cell cycle anatomical structure maturation cellular process germ cell development oocyte maturation oocyte differentiation cellular response to stimulus response to stimulus signaling adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction negative regulation of cAMP/PKA signal transduction intracellular signal transduction negative regulation of cell communication cAMP/PKA signal transduction regulation of intracellular signal transduction intracellular signaling cassette negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction regulation of cAMP/PKA signal transduction regulation of response to stimulus	cell periphery cellular anatomical structure sarcolemma plasma membrane membrane T-tubule membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm cell periphery cellular anatomical structure sarcolemma plasma membrane membrane T-tubule membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle cell projection cytoskeleton organelle membraneless organelle cytoplasm nucleus germinal vesicle germ cell nucleus intracellular membrane-bounded organelle female germ cell nucleus centrosome microtubule organizing center microtubule cytoskeleton cytosol protein-containing complex synapse cell junction glutamatergic synapse perinuclear region of cytoplasm protein kinase complex transferase complex, transferring phosphorus-containing groups catalytic complex transferase complex intracellular protein-containing complex nucleotide-activated protein kinase complex cAMP-dependent protein kinase complex serine/threonine protein kinase complex membrane microdomain membrane raft plasma membrane raft plasma membrane region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E, I	IPR036034	PDZ superfamily	Homologous Superfamily
A, E, I	IPR001478	PDZ domain	Domain
A, E, I	IPR051067	Na+/H+ exchange regulatory cofactor	Family
D, H, J [auth L]	IPR016137	RGS domain	Domain
D, H, J [auth L]	IPR037719	A-kinase anchor protein 10, PKA-binding (AKB) domain	Domain
D, H, J [auth L]	IPR052246	Cell Polarization and PKA Anchoring	Family
D, H, J [auth L]	IPR036305	RGS domain superfamily	Homologous Superfamily
D, H, J [auth L]	IPR044926	RGS, subdomain 2	Homologous Superfamily
B, C, F, G	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
B, C, F, G	IPR018488	Cyclic nucleotide-binding, conserved site	Conserved Site
B, C, F, G	IPR003117	cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	Domain
B, C, F, G	IPR000595	Cyclic nucleotide-binding domain	Domain
B, C, F, G	IPR050503	cAMP-dependent protein kinase regulatory subunit-like	Family
B, C, F, G	IPR012198	cAMP-dependent protein kinase regulatory subunit	Family
B, C, F, G	IPR018490	Cyclic nucleotide-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, E, I	Pharos: Q5T2W1	breast carcinoma adenoid cystic carcinoma prostate cancer salivary gland adenoid cystic carcinoma Malignant neoplasm of breast psoriasis breast cancer schizophrenia salivary gland cancer
D, H, J [auth L]	Pharos: O43572	sudden cardiac arrest astrocytic tumor Familial Sudden Death lung cancer osteosarcoma pancreatic intraductal papillary-mucinous neoplasm bipolar disorder glioblastoma malignant ependymoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia large cell medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Pick disease sudden cardiac arrest astrocytic tumor Familial Sudden Death lung cancer osteosarcoma pancreatic intraductal papillary-mucinous neoplasm bipolar disorder glioblastoma malignant ependymoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia large cell medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Pick disease ulcerative colitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.