3R1X

Crystal structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Actin-like ATPases	8102738	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8102740	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8102740	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8102738	3000092	SCOP2B (2022-06-29)
C	SCOP2 Family	2-oxo-3-deoxygalactonate kinase-like	8046704	4005250	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Actin-like ATPases	8102738	3000092	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Actin-like ATPases	8102740	3000092	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8102738	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8102740	3000092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DGOK_C	e3r1xA2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_C	ECOD (1.6)
A	DGOK_N	e3r1xA1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_N	ECOD (1.6)
B	DGOK_C	e3r1xB2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_C	ECOD (1.6)
B	DGOK_N	e3r1xB1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_N	ECOD (1.6)
C	DGOK_C	e3r1xC2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_C	ECOD (1.6)
C	DGOK_N	e3r1xC1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_N	ECOD (1.6)
D	DGOK_C	e3r1xD2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_C	ECOD (1.6)
D	DGOK_N	e3r1xD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: DGOK_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.420.300	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	3.30.420.310	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.420.300	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.420.310	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.30.420.300	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.30.420.310	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
D	3.30.420.300	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
D	3.30.420.310	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF05035	2-keto-3-deoxy-galactonokinase (DGOK)	2-keto-3-deoxy-galactonokinase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	2-oxo-3-deoxygalactonate kinase	carbohydrate kinase activity kinase activity 2-dehydro-3-deoxygalactonokinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	catabolic process oxoacid metabolic process carbohydrate catabolic process aldonic acid catabolic process organic acid metabolic process organic acid catabolic process cellular catabolic process organic substance metabolic process monocarboxylic acid catabolic process D-galactonate metabolic process carboxylic acid catabolic process small molecule metabolic process carbohydrate metabolic process cellular metabolic process catabolic process oxoacid metabolic process carbohydrate catabolic process aldonic acid catabolic process organic acid metabolic process organic acid catabolic process cellular catabolic process organic substance metabolic process monocarboxylic acid catabolic process D-galactonate metabolic process carboxylic acid catabolic process small molecule metabolic process carbohydrate metabolic process cellular metabolic process carboxylic acid metabolic process primary metabolic process aldonic acid metabolic process galactonate catabolic process D-galactonate catabolic process metabolic process cellular process monocarboxylic acid metabolic process small molecule catabolic process organic substance catabolic process galactonate metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR007729	2-keto-3-deoxy-galactonokinase	Family
A, B, C, D	IPR042257	2-keto-3-deoxy-galactonokinase, C-terminal domain	Homologous Superfamily
A, B, C, D	IPR042258	2-keto-3-deoxy-galactonokinase, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.