3P94 | pdb_00003p94

Crystal structure of a GDSL-like Lipase (BDI_0976) from Parabacteroides distasonis ATCC 8503 at 1.93 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3p94d_	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ],	SCOPe (2.08)
C	d3p94c_	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ],	SCOPe (2.08)
B	d3p94b1	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ],	SCOPe (2.08)
B	d3p94b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ],	SCOPe (2.08)
A	d3p94a1	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ],	SCOPe (2.08)
A	d3p94a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Lipase_GDSL_2	e3p94D1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)
C	Lipase_GDSL_2	e3p94C1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)
B	Lipase_GDSL_2	e3p94B1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)
A	Lipase_GDSL_2	e3p94A1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)
C	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)
B	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)
A	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13472	GDSL-like Lipase/Acylhydrolase family (Lipase_GDSL_2)	GDSL-like Lipase/Acylhydrolase family	This family of presumed lipases and related enzymes are similar to Pfam:PF00657.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	GDSL-like Lipase	lysophospholipase activity phosphatidylcholine lysophospholipase activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity phospholipase activity lipase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013830	SGNH hydrolase-type esterase domain	Domain
A, B, C, D	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR051532	Diverse Ester Hydrolysis Enzymes	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Monotopic/peripheral	Alpha/Beta monotopic/peripheral	SGNH hydrolase superfamily	GDSL-like lipase, family 2

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.