Annotations: 3NVQ

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	I-set_3	e3nvqA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set_3	ECOD (1.6)
A	Sema_1	e3nvqA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Sema_1	ECOD (1.6)
A	PSI_1	e3nvqA2	A: few secondary structure elements	X: Trefoil/Plexin domain-like (From Topology)	H: Trefoil/Plexin domain-like (From Topology)	T: Trefoil/Plexin domain-like	F: PSI_1	ECOD (1.6)
C [auth E]	I-set_3	e3nvqE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set_3	ECOD (1.6)
C [auth E]	Sema_1	e3nvqE2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Sema_1	ECOD (1.6)
C [auth E]	PSI_1	e3nvqE3	A: few secondary structure elements	X: Trefoil/Plexin domain-like (From Topology)	H: Trefoil/Plexin domain-like (From Topology)	T: Trefoil/Plexin domain-like	F: PSI_1	ECOD (1.6)
B	Sema_2	e3nvqB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Sema_2	ECOD (1.6)
B	PSI	e3nvqB2	A: few secondary structure elements	X: Trefoil/Plexin domain-like (From Topology)	H: Trefoil/Plexin domain-like (From Topology)	T: Trefoil/Plexin domain-like	F: PSI	ECOD (1.6)
D [auth F]	Sema_2	e3nvqF1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Sema_2	ECOD (1.6)
D [auth F]	PSI	e3nvqF2	A: few secondary structure elements	X: Trefoil/Plexin domain-like (From Topology)	H: Trefoil/Plexin domain-like (From Topology)	T: Trefoil/Plexin domain-like	F: PSI	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	3.30.1680.10	Alpha Beta	2-Layer Sandwich	ligand-binding face of the semaphorins, domain 2	ligand-binding face of the semaphorins, domain 2	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C [auth E]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C [auth E]	3.30.1680.10	Alpha Beta	2-Layer Sandwich	ligand-binding face of the semaphorins, domain 2	ligand-binding face of the semaphorins, domain 2	CATH (4.3.0)
C [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth E]	PF01437	Plexin repeat (PSI)	Plexin repeat	-	Family
A, C [auth E]	PF01403	Sema domain (Sema)	Sema domain	-	Repeat
A, C [auth E]	PF13895	Immunoglobulin domain (Ig_2)	Immunoglobulin domain	This domain contains immunoglobulin-like domains.	Domain
B, D [auth F]	PF01437	Plexin repeat (PSI)	Plexin repeat	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth E]	Semaphorin-7A	cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding semaphorin receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity chemorepellent activity receptor ligand activity signaling receptor activator activity	developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of MAPK cascade biological regulation positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling immune response immune system process head development olfactory lobe development forebrain development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development telencephalon development system development negative regulation of locomotion developmental growth cell projection organization negative regulation of chemotaxis neuron projection development regulation of cell development cell projection morphogenesis neuron differentiation regulation of biological quality chemotaxis regulation of cell projection organization response to external stimulus generation of neurons negative regulation of axonogenesis negative regulation of developmental growth negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process regulation of response to external stimulus plasma membrane bounded cell projection morphogenesis cell development cell growth neurogenesis negative regulation of neurogenesis regulation of axon extension involved in axon guidance regulation of extent of cell growth negative regulation of nervous system development negative regulation of cell differentiation regulation of anatomical structure morphogenesis locomotion neuron projection extension regulation of developmental growth developmental cell growth negative regulation of developmental process growth axon development negative regulation of axon extension regulation of chemotaxis regulation of cell growth cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis negative regulation of cell development neuron projection guidance neuron development axon extension regulation of growth axonogenesis regulation of cellular component size negative regulation of biological process regulation of cell differentiation regulation of neurogenesis negative regulation of growth neuron projection morphogenesis taxis neuron projection extension involved in neuron projection guidance negative regulation of cellular component organization negative regulation of axon extension involved in axon guidance negative regulation of cell growth developmental growth involved in morphogenesis response to chemical regulation of locomotion negative regulation of response to external stimulus cell morphogenesis regulation of axon extension cellular component organization regulation of nervous system development regulation of axonogenesis negative regulation of cellular process regulation of multicellular organismal process cellular component organization or biogenesis axon extension involved in axon guidance negative regulation of cell projection organization regulation of cell size regulation of multicellular organismal development plasma membrane bounded cell projection organization negative regulation of response to stimulus axon guidance negative regulation of neuron projection development regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size integrin-mediated signaling pathway cell surface receptor signaling pathway positive regulation of nervous system development positive regulation of developmental process positive regulation of cell projection organization positive regulation of developmental growth positive regulation of cell development positive regulation of multicellular organismal process positive regulation of cellular component organization positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of axon extension positive regulation of axonogenesis positive regulation of cell growth positive regulation of growth stem cell development neural crest cell differentiation neural crest cell development mesenchyme development tissue development mesenchymal cell migration stem cell differentiation ameboidal-type cell migration cell migration mesenchymal cell differentiation cell motility neural crest cell migration semaphorin-plexin signaling pathway regulation of defense response defense response regulation of inflammatory response response to stress regulation of response to stress inflammatory response negative chemotaxis positive regulation of locomotion regulation of cell motility positive regulation of cell migration positive regulation of cell motility regulation of cell migration regulation of immune effector process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process cytokine production organic substance biosynthetic process regulation of immune system process positive regulation of macromolecule metabolic process positive regulation of immune system process regulation of cytokine production involved in immune response cellular metabolic process regulation of cellular metabolic process immune effector process regulation of gene expression biosynthetic process regulation of macrophage cytokine production positive regulation of production of molecular mediator of immune response metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of production of molecular mediator of immune response positive regulation of cytokine production regulation of metabolic process positive regulation of macrophage cytokine production cellular biosynthetic process positive regulation of cellular metabolic process organic substance metabolic process positive regulation of biosynthetic process positive regulation of myeloid leukocyte cytokine production involved in immune response regulation of cytokine production positive regulation of immune effector process myeloid leukocyte cytokine production cytokine production involved in immune response production of molecular mediator of immune response regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process positive regulation of gene expression positive regulation of cytokine production involved in immune response positive regulation of cellular biosynthetic process macrophage cytokine production positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of protein modification process regulation of phosphate metabolic process phosphate-containing compound metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process organonitrogen compound metabolic process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process primary metabolic process macromolecule modification regulation of phosphorus metabolic process regulation of phosphorylation	cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane
B, D [auth F]	Plexin-C1	protein binding binding signaling receptor binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity semaphorin receptor activity	multicellular organismal process positive regulation of nervous system development axonogenesis regulation of cellular process cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development positive regulation of developmental process multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation multicellular organismal process positive regulation of nervous system development axonogenesis regulation of cellular process cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development positive regulation of developmental process multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development positive regulation of cell projection organization system development developmental process regulation of biological process regulation of cell projection organization positive regulation of cell development nervous system development generation of neurons positive regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell morphogenesis cellular component organization regulation of nervous system development neurogenesis positive regulation of cell differentiation regulation of axonogenesis positive regulation of neurogenesis regulation of multicellular organismal process cellular component organization or biogenesis positive regulation of axonogenesis regulation of anatomical structure morphogenesis positive regulation of cellular process regulation of multicellular organismal development plasma membrane bounded cell projection organization biological regulation axon development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron development cellular process regulation of plasma membrane bounded cell projection organization cellular component disassembly regulation of synapse pruning cell junction disassembly synapse pruning regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality regulation of cell motility regulation of locomotion regulation of cell migration cell migration cell motility locomotion regulation of cell shape regulation of cell morphogenesis cell adhesion regulation of cell adhesion negative regulation of cellular process negative regulation of biological process negative regulation of cell adhesion cellular response to stimulus response to stimulus semaphorin-plexin signaling pathway signaling cell communication signal transduction semaphorin-plexin signaling pathway involved in neuron projection guidance semaphorin-plexin signaling pathway involved in axon guidance cell surface receptor signaling pathway axon guidance neuron projection guidance	membrane cellular anatomical entity cell periphery plasma membrane protein-containing complex semaphorin receptor complex receptor complex cerebellar climbing fiber to Purkinje cell synapse neuron to neuron synapse synapse cell junction asymmetric synapse glutamatergic synapse excitatory synapse membrane cellular anatomical entity cell periphery plasma membrane protein-containing complex semaphorin receptor complex receptor complex cerebellar climbing fiber to Purkinje cell synapse neuron to neuron synapse synapse cell junction asymmetric synapse glutamatergic synapse excitatory synapse asymmetric, glutamatergic, excitatory synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth E]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C [auth E]	IPR016201	PSI domain	Domain
A, C [auth E]	IPR027231	Semaphorin	Family
A, C [auth E]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, C [auth E]	IPR002165	Plexin repeat	Repeat
A, C [auth E]	IPR042824	Semaphorin-7A, sema domain	Domain
A, C [auth E]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C [auth E]	IPR036352	Sema domain superfamily	Homologous Superfamily
A, C [auth E]	IPR007110	Immunoglobulin-like domain	Domain
A, C [auth E]	IPR001627	Sema domain	Domain
B, D [auth F]	IPR002909	IPT domain	Domain
B, D [auth F]	IPR016201	PSI domain	Domain
B, D [auth F]	IPR008936	Rho GTPase activation protein	Homologous Superfamily
B, D [auth F]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B, D [auth F]	IPR002165	Plexin repeat	Repeat
B, D [auth F]	IPR041853	Plexin-C1, Sema domain	Domain
B, D [auth F]	IPR031148	Plexin family	Family
B, D [auth F]	IPR046800	Plexin, cytoplasmic RhoGTPase-binding domain	Domain
B, D [auth F]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, D [auth F]	IPR013548	Plexin, cytoplasmic RasGAP domain	Domain
B, D [auth F]	IPR036352	Sema domain superfamily	Homologous Superfamily
B, D [auth F]	IPR001627	Sema domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C [auth E]	Pharos: O75326	atypical teratoid rhabdoid tumor glioblastoma Kallmann syndrome malignant glioma pituitary cancer tuberculosis cleft lip hypertensive disorder large cell medulloblastoma medulloblastoma psoriasis cystic fibrosis Idiopathic Hypogonadotropic Hypogonadism malignant ependymoma osteoarthritis atypical teratoid rhabdoid tumor glioblastoma Kallmann syndrome malignant glioma pituitary cancer tuberculosis cleft lip hypertensive disorder large cell medulloblastoma medulloblastoma psoriasis cystic fibrosis Idiopathic Hypogonadotropic Hypogonadism malignant ependymoma osteoarthritis subependymal giant cell astrocytoma
B, D [auth F]	Pharos: O60486	endometriosis pancreatic ductal adenocarcinoma Sjogren syndrome adrenal cortex carcinoma chronic obstructive pulmonary disease Endometrioma glioblastoma invasive ductal breast carcinoma malignant mesothelioma osteosarcoma psoriasis tuberculosis atypical teratoid rhabdoid tumor Crohn disease head and neck cancer endometriosis pancreatic ductal adenocarcinoma Sjogren syndrome adrenal cortex carcinoma chronic obstructive pulmonary disease Endometrioma glioblastoma invasive ductal breast carcinoma malignant mesothelioma osteosarcoma psoriasis tuberculosis atypical teratoid rhabdoid tumor Crohn disease head and neck cancer large cell medulloblastoma malignant pancreatic neoplasm ovarian cancer sarcoidosis ulcerative colitis B-cell chronic lymphocytic leukemia diabetes mellitus gastric carcinoma interstitial cystitis lung cancer medulloblastoma