3LYC | pdb_00003lyc

Crystal structure of Putative pectinase (YP_001304412.1) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
H	SCOP2 Family	Head GIN domain-like	8045910	4004759	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	RVP	e3lycP1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
O	RVP	e3lycO1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
N	RVP	e3lycN1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
M	RVP	e3lycM1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
L	RVP	e3lycL1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
K	RVP	e3lycK1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
J	RVP	e3lycJ1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
I	RVP	e3lycI1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
H	RVP	e3lycH1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
G	RVP	e3lycG1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
F	RVP	e3lycF1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
E	RVP	e3lycE1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
D	RVP	e3lycD1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
C	RVP	e3lycC1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
B	RVP	e3lycB1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
A	RVP	e3lycA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
P	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
O	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
N	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
M	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
L	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
K	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
J	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
I	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
H	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
G	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
F	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
E	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
D	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
C	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
B	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)
A	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF10988	Putative auto-transporter adhesin, head GIN domain (DUF2807)	Putative auto-transporter adhesin, head GIN domain	-	Repeat

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR021255	Putative auto-transporter adhesin, head GIN domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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