3LYC | pdb_00003lyc

Crystal structure of Putative pectinase (YP_001304412.1) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
H	SCOP2 Family	Head GIN domain-like	8045910	4004759	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Toaster rack adhesin-like	8092232	3002573	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	DUF2807	e3lycP1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
O	DUF2807	e3lycO1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
N	DUF2807	e3lycN1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
M	DUF2807	e3lycM1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
L	DUF2807	e3lycL1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
K	DUF2807	e3lycK1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
J	DUF2807	e3lycJ1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
I	DUF2807	e3lycI1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
H	DUF2807	e3lycH1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
G	DUF2807	e3lycG1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
F	DUF2807	e3lycF1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
E	DUF2807	e3lycE1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
D	DUF2807	e3lycD1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
C	DUF2807	e3lycC1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
B	DUF2807	e3lycB1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)
A	DUF2807	e3lycA1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF2807	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
O	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
N	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
M	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
L	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
K	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
J	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
I	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
H	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
G	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
F	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
E	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
D	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
C	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
B	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)
A	2.160.20.120	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF10988	Putative auto-transporter adhesin, head GIN domain (DUF2807)	Putative auto-transporter adhesin, head GIN domain	-	Repeat

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR021255	Putative auto-transporter adhesin, head GIN domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.