Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth M] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082679 | 3000100 | SCOP2B (2022-06-29) |
| YB [auth AX] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053062 | 3002158 | SCOP2B (2022-06-29) |
| SB [auth AF] | SCOP2B Superfamily | Ribosomal protein L4 | 8052823 | 3001146 | SCOP2B (2022-06-29) |
| SB [auth AF] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052822 | 3002143 | SCOP2B (2022-06-29) |
| RB [auth AE] | SCOP2B Superfamily | Translational proteins | 8078355 | 3000811 | SCOP2B (2022-06-29) |
| G [auth K] | SCOP2B Superfamily | Ribosomal protein S8 | 8081977 | 3000709 | SCOP2B (2022-06-29) |
| PB [auth A5] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052932 | 3001378 | SCOP2B (2022-06-29) |
| PB [auth A5] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052931 | 3002152 | SCOP2B (2022-06-29) |
| NB [auth AZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076764 | 3000334 | SCOP2B (2022-06-29) |
| LB [auth AY] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095963 | 3000210 | SCOP2B (2022-06-29) |
| KB [auth AW] | SCOP2B Superfamily | Ribosomal protein L22 | 8076716 | 3001078 | SCOP2B (2022-06-29) |
| JB [auth AR] | SCOP2B Superfamily | Translational machinery components | 8052890 | 3000571 | SCOP2B (2022-06-29) |
| IB [auth AQ] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8100158 | 3000884 | SCOP2B (2022-06-29) |
| HB [auth AO] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077125 | 3001045 | SCOP2B (2022-06-29) |
| F [auth I] | SCOP2B Superfamily | Ribosomal protein S7 | 8066011 | 3000799 | SCOP2B (2022-06-29) |
| GB [auth AS] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095974 | 3001045 | SCOP2B (2022-06-29) |
| FB [auth AM] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072060 | 3000433 | SCOP2B (2022-06-29) |
| ZA [auth Ah] | SCOP2 Family | Ribosomal protein L37ae | 8098253 | 4003704 | SCOP2 (2022-06-29) |
| ZA [auth Ah] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8098254 | 3001320 | SCOP2 (2022-06-29) |
| YA [auth AP] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082473 | 3000210 | SCOP2B (2022-06-29) |
| XA [auth Af] | SCOP2 Family | Ribosomal protein L40e | 8101706 | 4002847 | SCOP2 (2022-06-29) |
| XA [auth Af] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8101707 | 3001320 | SCOP2 (2022-06-29) |
| WA [auth Ae] | SCOP2 Family | ribosomal protein l39e | 8097351 | 4001518 | SCOP2 (2022-06-29) |
| WA [auth Ae] | SCOP2 Superfamily | Ribosomal protein L39e | 8097352 | 3001756 | SCOP2 (2022-06-29) |
| VA [auth Ad] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053570 | 3002206 | SCOP2B (2022-06-29) |
| UA [auth Ab] | SCOP2B Superfamily | Ribosomal protein L36e | 8053116 | 3002161 | SCOP2B (2022-06-29) |
| TA [auth Aa] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053541 | 3002203 | SCOP2B (2022-06-29) |
| SA [auth A9] | SCOP2B Superfamily | Translational proteins | 8087449 | 3000811 | SCOP2B (2022-06-29) |
| OA [auth A6] | SCOP2B Superfamily | L30e-like | 8077495 | 3001739 | SCOP2B (2022-06-29) |
| NA [auth A4] | SCOP2B Superfamily | Ribosomal protein L29e | 8053042 | 3002157 | SCOP2B (2022-06-29) |
| LA [auth A1] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053055 | 3000334 | SCOP2B (2022-06-29) |
| KA [auth AL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053153 | 3002162 | SCOP2B (2022-06-29) |
| GA [auth C] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063816 | 3001397 | SCOP2B (2022-06-29) |
| EA [auth V] | SCOP2 Family | Ribosomal S17 N-terminal domain-like | 8045085 | 4004290 | SCOP2 (2022-06-29) |
| EA [auth V] | SCOP2 Family | Cold shock DNA-binding domain-like | 8052725 | 4001909 | SCOP2 (2022-06-29) |
| EA [auth V] | SCOP2 Superfamily | Ribosomal S17 N-terminal domain-like | 8052724 | 3002138 | SCOP2 (2022-06-29) |
| EA [auth V] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052726 | 3000135 | SCOP2 (2022-06-29) |
| DA [auth U] | SCOP2 Family | 40S Ribosomal protein S13, N-terminal domain-like | 8050310 | 4006843 | SCOP2 (2022-06-29) |
| DA [auth U] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8052963 | 4000767 | SCOP2 (2022-06-29) |
| DA [auth U] | SCOP2 Superfamily | Homeodomain-like | 8052964 | 3000001 | SCOP2 (2022-06-29) |
| DA [auth U] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8052965 | 3001284 | SCOP2 (2022-06-29) |
| CA [auth T] | SCOP2 Family | Ribosomal protein S14p/S29e | 8047573 | 4003647 | SCOP2 (2022-06-29) |
| CA [auth T] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052571 | 3000068 | SCOP2 (2022-06-29) |
| BA [auth S] | SCOP2B Superfamily | S13-like H2TH domain | 8100146 | 3000053 | SCOP2B (2022-06-29) |
| Y [auth N] | SCOP2B Superfamily | Ribosomal protein S10 | 8100154 | 3001336 | SCOP2B (2022-06-29) |
| X [auth L] | SCOP2 Family | Ribosomal protein S8e | 8048713 | 4006189 | SCOP2 (2022-06-29) |
| X [auth L] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8053078 | 3000433 | SCOP2 (2022-06-29) |
| V [auth H] | SCOP2 Family | Ribosomal protein S6e | 8048563 | 4006143 | SCOP2 (2022-06-29) |
| V [auth H] | SCOP2 Superfamily | GS N-terminal domain-like | 8053165 | 3000408 | SCOP2 (2022-06-29) |
| U [auth F] | SCOP2 Family | Ribosomal protein S4e, C-terminal KOW domain-like | 8044900 | 4004197 | SCOP2 (2022-06-29) |
| U [auth F] | SCOP2 Family | Cold shock DNA-binding domain-like | 8048392 | 4001909 | SCOP2 (2022-06-29) |
| U [auth F] | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050330 | 4006847 | SCOP2 (2022-06-29) |
| U [auth F] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052750 | 3000334 | SCOP2 (2022-06-29) |
| U [auth F] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052749 | 3000135 | SCOP2 (2022-06-29) |
| U [auth F] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052748 | 3001473 | SCOP2 (2022-06-29) |
| T [auth B] | SCOP2 Family | Ribosomal S3Ae | 8048447 | 4006095 | SCOP2 (2022-06-29) |
| T [auth B] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053207 | 3002166 | SCOP2 (2022-06-29) |
| S [auth 6] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053452 | 3002190 | SCOP2B (2022-06-29) |
| R [auth 5] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063420 | 3000135 | SCOP2B (2022-06-29) |
| P [auth 3] | SCOP2 Family | Ribosomal protein S26e | 8048840 | 4006236 | SCOP2 (2022-06-29) |
| P [auth 3] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053146 | 3000068 | SCOP2 (2022-06-29) |
| M [auth Z] | SCOP2 Family | Ribosomal protein S21e | 8048777 | 4006215 | SCOP2 (2022-06-29) |
| M [auth Z] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053137 | 3000068 | SCOP2 (2022-06-29) |
| K [auth O] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055711 | 3000034 | SCOP2B (2022-06-29) |
| J [auth R] | SCOP2B Superfamily | L30e-like | 8063972 | 3001739 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth W] | SPRY | e3jbpW1 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: SPRY | ECOD (v294.1) |
| H [auth M] | PID | e3jbpM1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| ZB [auth A0] | PID | e3jbpA01 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| YB [auth AX] | SPRY | e3jbpAX1 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: SPRY | ECOD (v294.1) |
| XB [auth Ag] | PID | e3jbpAg1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| WB [auth AV] | PID | e3jbpAV1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| VB [auth AH] | PID | e3jbpAH1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| UB [auth AU] | PID | e3jbpAU1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| TB [auth AG] | PID | e3jbpAG1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| RB [auth AE] | PID | e3jbpAE1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| G [auth K] | PID | e3jbpK1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| QB [auth AD] | PID | e3jbpAD1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| PB [auth A5] | PID | e3jbpA51 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| OB [auth A3] | PID | e3jbpA31 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| NB [auth AZ] | PID | e3jbpAZ1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| MB [auth AT] | PID | e3jbpAT1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| LB [auth AY] | PID | e3jbpAY1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| KB [auth AW] | PID | e3jbpAW1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| JB [auth AR] | PID | e3jbpAR1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| IB [auth AQ] | PID | e3jbpAQ1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| HB [auth AO] | WD40, Beta-prop_NOL10_N | e3jbpAO1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: WD40, Beta-prop_NOL10_N | ECOD (v294.1) |
| F [auth I] | PID | e3jbpI1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| GB [auth AS] | PID | e3jbpAS1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| FB [auth AM] | PID | e3jbpAM1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| EB [auth AK] | PID | e3jbpAK1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| DB [auth Ac] | PID | e3jbpAc1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| CB [auth AJ] | PID | e3jbpAJ1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| BB [auth AI] | TM_ErbB1 | e3jbpAI1 | A: a/b three-layered sandwiches | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: C-terminal additional helical subdomain in reovirus polymerase lambda3 | F: TM_ErbB1 | ECOD (v294.1) |
| AB [auth Ai] | PID | e3jbpAi1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| ZA [auth Ah] | PID | e3jbpAh1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| YA [auth AP] | PID | e3jbpAP1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| XA [auth Af] | PID | e3jbpAf1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| E [auth G] | PID | e3jbpG3 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| E [auth G] | SPRY | e3jbpG1 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: SPRY | ECOD (v294.1) |
| E [auth G] | Glutaminase | e3jbpG4 | A: a/b three-layered sandwiches | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Glutaminase | ECOD (v294.1) |
| WA [auth Ae] | PID | e3jbpAe1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| VA [auth Ad] | MG2 | e3jbpAd1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: MG2 | ECOD (v294.1) |
| UA [auth Ab] | MG2 | e3jbpAb1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: MG2 | ECOD (v294.1) |
| TA [auth Aa] | MG2 | e3jbpAa1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: MG2 | ECOD (v294.1) |
| SA [auth A9] | PID | e3jbpA91 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| RA [auth A8] | PID | e3jbpA81 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| QA [auth AN] | SPRY | e3jbpAN1 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: SPRY | ECOD (v294.1) |
| PA [auth A7] | PID | e3jbpA71 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| OA [auth A6] | PID | e3jbpA61 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| NA [auth A4] | MG2 | e3jbpA41 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: MG2 | ECOD (v294.1) |
| D [auth E] | SPRY | e3jbpE1 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: SPRY | ECOD (v294.1) |
| MA [auth A2] | MG1 | e3jbpA21 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: MG1 | ECOD (v294.1) |
| LA [auth A1] | PID | e3jbpA11 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| KA [auth AL] | Ribosomal_L13e | e3jbpAL1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: Ribosomal_L13e | ECOD (v294.1) |
| GA [auth C] | PID | e3jbpC1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| FA [auth X] | PID | e3jbpX1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| EA [auth V] | PID | e3jbpV1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| DA [auth U] | PID | e3jbpU1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| C [auth D] | PID | e3jbpD1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| CA [auth T] | PID | e3jbpT1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| BA [auth S] | PID | e3jbpS1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| AA [auth Q] | PID | e3jbpQ1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| Z [auth P] | PID | e3jbpP1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| Y [auth N] | PID | e3jbpN1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| X [auth L] | PID | e3jbpL1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| W [auth J] | PID | e3jbpJ1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| V [auth H] | PID | e3jbpH1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| U [auth F] | PID | e3jbpF1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| T [auth B] | PID | e3jbpB1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| S [auth 6] | SPRY | e3jbp61 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: SPRY | ECOD (v294.1) |
| R [auth 5] | PID | e3jbp51 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| Q [auth 4] | PID | e3jbp41 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| P [auth 3] | PID | e3jbp31 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| O [auth 2] | PID | e3jbp21 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| N [auth 1] | PID | e3jbp11 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| M [auth Z] | Fer4, Fer4_7, Fer4_10 | e3jbpZ1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Aha1/BPI domain-like | F: Fer4, Fer4_7, Fer4_10 | ECOD (v294.1) |
| L [auth Y] | PID | e3jbpY1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| K [auth O] | PID | e3jbpO1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
| J [auth R] | PID | e3jbpR1 | A: a/b three-layered sandwiches | X: PH domain-like | H: PH domain-like | T: PH domain-like | F: PID | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth W] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
| H [auth M] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| ZB [auth A0] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| YB [auth AX] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| WB [auth AV] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| VB [auth AH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| VB [auth AH] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| UB [auth AU] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| TB [auth AG] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| TB [auth AG] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| TB [auth AG] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| SB [auth AF] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| SB [auth AF] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| RB [auth AE] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| RB [auth AE] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| G [auth K] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| QB [auth AD] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| QB [auth AD] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| QB [auth AD] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
| PB [auth A5] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
| PB [auth A5] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| OB [auth A3] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| NB [auth AZ] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| NB [auth AZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| MB [auth AT] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| MB [auth AT] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| LB [auth AY] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| KB [auth AW] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| JB [auth AR] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| JB [auth AR] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| IB [auth AQ] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| HB [auth AO] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| F [auth I] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| GB [auth AS] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| FB [auth AM] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| EB [auth AK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| BB [auth AI] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| YA [auth AP] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| E [auth G] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| E [auth G] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| SA [auth A9] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| RA [auth A8] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| QA [auth AN] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| PA [auth A7] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| OA [auth A6] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| NA [auth A4] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| D [auth E] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| D [auth E] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| MA [auth A2] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
| LA [auth A1] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| KA [auth AL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| JA [auth AB] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| IA [auth AC] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| GA [auth C] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| FA [auth X] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| EA [auth V] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| EA [auth V] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| DA [auth U] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
| DA [auth U] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| C [auth D] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| C [auth D] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| CA [auth T] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| BA [auth S] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| AA [auth Q] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| Y [auth N] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| X [auth L] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| W [auth J] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| V [auth H] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| U [auth F] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| U [auth F] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| U [auth F] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| U [auth F] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| T [auth B] | PF01015 | Ribosomal S3Ae family (Ribosomal_S3Ae) | Ribosomal S3Ae family | - | Family |
| S [auth 6] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
| R [auth 5] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| Q [auth 4] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| P [auth 3] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
| O [auth 2] | PF03297 | S25 ribosomal protein (Ribosomal_S25) | S25 ribosomal protein | - | Family |
| N [auth 1] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| M [auth Z] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| L [auth Y] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| K [auth O] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| J [auth R] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |














