Annotations: 3J6D

Model of the PrgH-PrgK periplasmic rings

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth b]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
Z [auth b]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
Y [auth a]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
Y [auth a]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
VA [auth Z]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
VA [auth Z]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
UA [auth Y]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
UA [auth Y]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
TA [auth v]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
TA [auth v]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
SA [auth u]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
SA [auth u]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
RA [auth t]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
RA [auth t]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
QA [auth s]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
QA [auth s]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
PA [auth r]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
PA [auth r]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
OA [auth q]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
OA [auth q]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
NA [auth p]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
NA [auth p]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
MA [auth o]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
MA [auth o]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
LA [auth n]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
LA [auth n]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
KA [auth m]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
KA [auth m]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
JA [auth l]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
JA [auth l]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
IA [auth k]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
IA [auth k]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
HA [auth j]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
HA [auth j]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
GA [auth i]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
GA [auth i]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
FA [auth h]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
FA [auth h]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
EA [auth g]	SCOP2 Family	YscJ/PrgK C-terminal domain-like	8049143	4006370	SCOP2 (2022-06-29)
EA [auth g]	SCOP2 Family	YscJ/PrgK N-terminal domain-like	8092187	4007764	SCOP2 (2022-06-29)
EA [auth g]	SCOP2 Superfamily	BON domain-like	8092191	3002566	SCOP2 (2022-06-29)
EA [auth g]	SCOP2 Superfamily	NRho-like	8092192	3002569	SCOP2 (2022-06-29)
DA [auth f]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
DA [auth f]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
CA [auth e]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
CA [auth e]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
BA [auth d]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)
BA [auth d]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
AA [auth c]	SCOP2B Superfamily	BON domain-like	8092191	3002566	SCOP2B (2022-06-29)
AA [auth c]	SCOP2B Superfamily	NRho-like	8092192	3002569	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth b]	Internalin_N	e3j6db1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
Y [auth a]	Internalin_N	e3j6da1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
VA [auth Z]	Internalin_N	e3j6dZ1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
UA [auth Y]	Internalin_N	e3j6dY1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
TA [auth v]	Internalin_N	e3j6dv1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
SA [auth u]	Internalin_N	e3j6du1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
RA [auth t]	Internalin_N	e3j6dt1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
QA [auth s]	Internalin_N	e3j6ds1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
PA [auth r]	Internalin_N	e3j6dr1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
OA [auth q]	Internalin_N	e3j6dq1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
NA [auth p]	Internalin_N	e3j6dp1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
MA [auth o]	Internalin_N	e3j6do1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
LA [auth n]	Internalin_N	e3j6dn1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
KA [auth m]	Internalin_N	e3j6dm1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
JA [auth l]	Internalin_N	e3j6dl1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
IA [auth k]	Internalin_N	e3j6dk1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
HA [auth j]	Internalin_N	e3j6dj1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
GA [auth i]	Internalin_N	e3j6di1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
FA [auth h]	Internalin_N	e3j6dh1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
EA [auth g]	Internalin_N	e3j6dg1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
DA [auth f]	Internalin_N	e3j6df1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
CA [auth e]	Internalin_N	e3j6de1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
BA [auth d]	Internalin_N	e3j6dd1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
AA [auth c]	Internalin_N	e3j6dc1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
X	Internalin_N	e3j6dX1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
W	Internalin_N	e3j6dW1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
V	Internalin_N	e3j6dV1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
U	Internalin_N	e3j6dU1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
T	Internalin_N	e3j6dT1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
S	Internalin_N	e3j6dS1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
R	Internalin_N	e3j6dR1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
Q	Internalin_N	e3j6dQ1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
P	Internalin_N	e3j6dP1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
O	Internalin_N	e3j6dO1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
N	Internalin_N	e3j6dN1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
M	Internalin_N	e3j6dM1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
L	Internalin_N	e3j6dL1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
K	Internalin_N	e3j6dK1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
J	Internalin_N	e3j6dJ1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
I	Internalin_N	e3j6dI1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
H	Internalin_N	e3j6dH1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
G	Internalin_N	e3j6dG1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
F	Internalin_N	e3j6dF1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
E	Internalin_N	e3j6dE1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
D	Internalin_N	e3j6dD1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
C	Internalin_N	e3j6dC1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
B	Internalin_N	e3j6dB1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)
A	Internalin_N	e3j6dA1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], IA [auth k], JA [auth l], KA [auth m], LA [auth n], MA [auth o], NA [auth p], OA [auth q], PA [auth r], QA [auth s], RA [auth t], SA [auth u], TA [auth v], UA [auth Y], VA [auth Z], Y [auth a], Z [auth b]	Pathogenicity 1 island effector protein	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Protein PrgH	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], IA [auth k], JA [auth l], KA [auth m], LA [auth n], MA [auth o], NA [auth p], OA [auth q], PA [auth r], QA [auth s], RA [auth t], SA [auth u], TA [auth v], UA [auth Y], VA [auth Z], Y [auth a], Z [auth b]	IPR006182	Flagellar M-ring, N-terminal	Domain
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], IA [auth k], JA [auth l], KA [auth m], LA [auth n], MA [auth o], NA [auth p], OA [auth q], PA [auth r], QA [auth s], RA [auth t], SA [auth u], TA [auth v], UA [auth Y], VA [auth Z], Y [auth a], Z [auth b]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], IA [auth k], JA [auth l], KA [auth m], LA [auth n], MA [auth o], NA [auth p], OA [auth q], PA [auth r], QA [auth s], RA [auth t], SA [auth u], TA [auth v], UA [auth Y], VA [auth Z], Y [auth a], Z [auth b]	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], IA [auth k], JA [auth l], KA [auth m], LA [auth n], MA [auth o], NA [auth p], OA [auth q], PA [auth r], QA [auth s], RA [auth t], SA [auth u], TA [auth v], UA [auth Y], VA [auth Z], Y [auth a], Z [auth b]	IPR003282	Type III secretion system lipoprotein SctJ	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR019029	Type III secretion system, PrgH/EprH-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR013387	Type III secretion system, PrgH/EprH	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3J6D | pdb_00003j6d

Model of the PrgH-PrgK periplasmic rings

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage