3J6D | pdb_00003j6d

Model of the PrgH-PrgK periplasmic rings


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth c]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
AA [auth c]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
CA [auth e]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
CA [auth e]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
DA [auth f]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
DA [auth f]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
EA [auth g]SCOP2 FamilyYscJ/PrgK C-terminal domain-like 8049143 4006370 SCOP2 (2022-06-29)
EA [auth g]SCOP2 FamilyYscJ/PrgK N-terminal domain-like 8092187 4007764 SCOP2 (2022-06-29)
EA [auth g]SCOP2 SuperfamilyBON domain-like 8092191 3002566 SCOP2 (2022-06-29)
EA [auth g]SCOP2 SuperfamilyNRho-like 8092192 3002569 SCOP2 (2022-06-29)
FA [auth h]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
FA [auth h]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
GA [auth i]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
GA [auth i]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
HA [auth j]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
HA [auth j]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
IA [auth k]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
IA [auth k]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
JA [auth l]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
JA [auth l]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
KA [auth m]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
KA [auth m]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
LA [auth n]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
LA [auth n]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
OA [auth q]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
OA [auth q]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
PA [auth r]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
PA [auth r]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
QA [auth s]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
QA [auth s]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
UA [auth Y]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
UA [auth Y]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
VA [auth Z]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
VA [auth Z]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
Y [auth a]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
Y [auth a]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
Z [auth b]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
Z [auth b]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth c]Internalin_Ne3j6dc1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
BA [auth d]Internalin_Ne3j6dd1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
CA [auth e]Internalin_Ne3j6de1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
DA [auth f]Internalin_Ne3j6df1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
EA [auth g]Internalin_Ne3j6dg1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
FA [auth h]Internalin_Ne3j6dh1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
GA [auth i]Internalin_Ne3j6di1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
HA [auth j]Internalin_Ne3j6dj1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
IA [auth k]Internalin_Ne3j6dk1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
JA [auth l]Internalin_Ne3j6dl1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
KA [auth m]Internalin_Ne3j6dm1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
LA [auth n]Internalin_Ne3j6dn1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
MA [auth o]Internalin_Ne3j6do1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
NA [auth p]Internalin_Ne3j6dp1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
OA [auth q]Internalin_Ne3j6dq1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
PA [auth r]Internalin_Ne3j6dr1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
QA [auth s]Internalin_Ne3j6ds1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
RA [auth t]Internalin_Ne3j6dt1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
SA [auth u]Internalin_Ne3j6du1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
TA [auth v]Internalin_Ne3j6dv1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
UA [auth Y]Internalin_Ne3j6dY1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
VA [auth Z]Internalin_Ne3j6dZ1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
Y [auth a]Internalin_Ne3j6da1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
Z [auth b]Internalin_Ne3j6db1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
AInternalin_Ne3j6dA1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
BInternalin_Ne3j6dB1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
CInternalin_Ne3j6dC1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
DInternalin_Ne3j6dD1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
EInternalin_Ne3j6dE1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
FInternalin_Ne3j6dF1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
GInternalin_Ne3j6dG1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
HInternalin_Ne3j6dH1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
IInternalin_Ne3j6dI1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
JInternalin_Ne3j6dJ1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
KInternalin_Ne3j6dK1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
LInternalin_Ne3j6dL1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
MInternalin_Ne3j6dM1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
NInternalin_Ne3j6dN1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
OInternalin_Ne3j6dO1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
PInternalin_Ne3j6dP1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
QInternalin_Ne3j6dQ1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
RInternalin_Ne3j6dR1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
SInternalin_Ne3j6dS1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
TInternalin_Ne3j6dT1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
UInternalin_Ne3j6dU1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
VInternalin_Ne3j6dV1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
WInternalin_Ne3j6dW1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)
XInternalin_Ne3j6dX1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v294.1)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006182Flagellar M-ring, N-terminalDomain
IPR045851AMP-binding enzyme domain superfamilyHomologous Superfamily
IPR043427Lipoprotein YscJ/Flagellar M-ring proteinFamily
IPR003282Type III secretion system lipoprotein SctJFamily
A, B, C, D, E
IPR019029Type III secretion system, PrgH/EprH-likeFamily
A, B, C, D, E
IPR013387Type III secretion system, PrgH/EprHFamily