3J4U | pdb_00003j4u

A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	e3j4uH1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Common fold of diphtheria toxin/transcription factors/cytochrome f	T:	F:	ECOD (20:10:01)
I	e3j4uI1	A: barrel domains in phase 1 flagellin	X: barrel domains in phase 1 flagellin	H: barrel domains in phase 1 flagellin	T: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	F:	ECOD (20:10:01)
J	e3j4uJ1	A: barrel domains in phase 1 flagellin	X: barrel domains in phase 1 flagellin	H: barrel domains in phase 1 flagellin	T: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	F:	ECOD (20:10:01)
M	e3j4uM1	A: barrel domains in phase 1 flagellin	X: barrel domains in phase 1 flagellin	H: barrel domains in phase 1 flagellin	T: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	F:	ECOD (20:10:01)
N	e3j4uN1	A: barrel domains in phase 1 flagellin	X: barrel domains in phase 1 flagellin	H: barrel domains in phase 1 flagellin	T: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	F:	ECOD (20:10:01)
L	e3j4uL1	A: barrel domains in phase 1 flagellin	X: barrel domains in phase 1 flagellin	H: barrel domains in phase 1 flagellin	T: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	F:	ECOD (20:10:01)
K	e3j4uK1	A: barrel domains in phase 1 flagellin	X: barrel domains in phase 1 flagellin	H: barrel domains in phase 1 flagellin	T: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	F:	ECOD (20:10:01)
A	e3j4uA1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: Alpha_L_fucos	F:	ECOD (20:10:01)
B	e3j4uB1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: OMPdecase	F:	ECOD (20:10:01)
D	e3j4uD1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: OMPdecase	F:	ECOD (20:10:01)
E	e3j4uE1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: OMPdecase	F:	ECOD (20:10:01)
F	e3j4uF1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: OMPdecase	F:	ECOD (20:10:01)
G	e3j4uG1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: OMPdecase	F:	ECOD (20:10:01)
C	e3j4uC1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: OMPdecase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
H	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
I	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
J	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
M	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
N	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
L	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
K	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H, I, J, K, L H, I, J, K, L, M, N	PF21190	Bbp16 (Bbp16)	Bbp16	-	Family
A, B, C, D, E A, B, C, D, E, F, G	PF20911	Major capsid protein GP7 (GP7)	Major capsid protein GP7	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H, I, J, K, L H, I, J, K, L, M, N	IPR048922	Bbp16	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR048813	Major capsid protein GP7-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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