3J4U | pdb_00003j4u

A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	PHA00664	e3j4uN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
M	PHA00664	e3j4uM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
L	PHA00664	e3j4uL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
K	PHA00664	e3j4uK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
J	PHA00664	e3j4uJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
I	PHA00664	e3j4uI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
H	PHA00664	e3j4uH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00664	ECOD (1.6)
G	PHA00665	e3j4uG1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
F	PHA00665	e3j4uF1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
E	PHA00665	e3j4uE1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
D	PHA00665	e3j4uD1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
C	PHA00665	e3j4uC1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
B	PHA00665	e3j4uB1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
A	PHA00665	e3j4uA1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
M	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
L	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
K	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
J	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
I	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	2.60.120.1110	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H, I, J, K, L H, I, J, K, L, M, N	PF21190	Bbp16 (Bbp16)	Bbp16	-	Family
A, B, C, D, E A, B, C, D, E, F, G	PF20911	Major capsid protein GP7 (GP7)	Major capsid protein GP7	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H, I, J, K, L H, I, J, K, L, M, N	IPR048922	Bbp16	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR048813	Major capsid protein GP7-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.