3IRP | pdb_00003irp

Crystal structure of functional region of UafA from Staphylococcus saprophyticus at 1.50 angstrom resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	SdrD B-like domain	8046617	4005193	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Fibrinogen-binding domain	8103558	4003881	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Fibrinogen-binding domain	8103559	4003881	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Carboxypeptidase regulatory domain-like	8103557	3000833	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Bacterial adhesin-like	8103560	3000723	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Bacterial adhesin-like	8103561	3000723	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	SdrD_B	e3irpX9	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: SdrD_B	ECOD (1.6)
A [auth X]	SdrG_C_C	e3irpX8	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
A [auth X]	Candida_ALS_N_like	e3irpX2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Candida_ALS_N_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A [auth X]	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A [auth X]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF17210	SdrD B-like domain (SdrD_B)	SdrD B-like domain	This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.	Domain
A [auth X]	PF17961	Bacterial Ig domain (Big_8)	Bacterial Ig domain	This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Uro-adherence factor A	-	cell adhesion cellular process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR033764	SD-repeat containing protein, B domain	Domain
A [auth X]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth X]	IPR005877	YSIRK Gram-positive signal peptide	Domain
A [auth X]	IPR008966	Adhesion domain superfamily	Homologous Superfamily
A [auth X]	IPR011252	Fibrogen-binding domain 1	Homologous Superfamily
A [auth X]	IPR019931	LPXTG cell wall anchor domain	Domain
A [auth X]	IPR041171	SDR-like Ig domain	Domain
A [auth X]	IPR053328	Uro-adherence factor A-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.