3IRP | pdb_00003irp

Crystal structure of functional region of UafA from Staphylococcus saprophyticus at 1.50 angstrom resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	SdrD B-like domain	8046617	4005193	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Fibrinogen-binding domain	8103558	4003881	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Fibrinogen-binding domain	8103559	4003881	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Carboxypeptidase regulatory domain-like	8103557	3000833	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Bacterial adhesin-like	8103560	3000723	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Bacterial adhesin-like	8103561	3000723	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	SdrG_C_C	e3irpX2	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.1)
A [auth X]	Fer4_13	e3irpX8	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A [auth X]	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A [auth X]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF17210	SdrD B-like domain (SdrD_B)	SdrD B-like domain	This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.	Domain
A [auth X]	PF17961	Bacterial Ig domain (Big_8)	Bacterial Ig domain	This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Uro-adherence factor A	-	cell adhesion cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR033764	SD-repeat containing protein, B domain	Domain
A [auth X]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth X]	IPR005877	YSIRK Gram-positive signal peptide	Domain
A [auth X]	IPR008966	Adhesion domain superfamily	Homologous Superfamily
A [auth X]	IPR011252	Fibrogen-binding domain 1	Homologous Superfamily
A [auth X]	IPR019931	LPXTG cell wall anchor motif	Conserved Site
A [auth X]	IPR041171	SDR-like Ig domain	Domain
A [auth X]	IPR053328	Uro-adherence factor A-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.