3IE5 | pdb_00003ie5

Crystal structure of Hyp-1 protein from Hypericum perforatum (St John's wort) involved in hypericin biosynthesis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3ie5a1	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	automated matches	automated matches	St. John's wort (Hypericum perforatum ) [TaxId: 65561 ],	SCOPe (2.08)
A	d3ie5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	St. John's wort (Hypericum perforatum ) [TaxId: 65561 ],	SCOPe (2.08)
B	d3ie5b1	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	automated matches	automated matches	St. John's wort (Hypericum perforatum ) [TaxId: 65561 ],	SCOPe (2.08)
B	d3ie5b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	St. John's wort (Hypericum perforatum ) [TaxId: 65561 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Pathogenesis-related protein 10 (PR10)-like	8063076	4002047	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bet v1-like	8063077	3000738	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Bet v1-like	8063077	3000738	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RbsD_FucU	e3ie5A1	A: a/b three-layered sandwiches	X: Cystatin-like	H: NTF2-like	T: NTF2-like	F: RbsD_FucU	ECOD (v294.1)
B	MIF	e3ie5B1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
B	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Phenolic oxidative coupling protein Hyp-1	enzyme regulator activity phosphatase inhibitor activity molecular function inhibitor activity phosphatase regulator activity molecular function regulator activity protein phosphatase regulator activity protein phosphatase inhibitor activity enzyme inhibitor activity molecular transducer activity signaling receptor activity organic acid binding binding alcohol binding isoprenoid binding enzyme regulator activity phosphatase inhibitor activity molecular function inhibitor activity phosphatase regulator activity molecular function regulator activity protein phosphatase regulator activity protein phosphatase inhibitor activity enzyme inhibitor activity molecular transducer activity signaling receptor activity organic acid binding binding alcohol binding isoprenoid binding hormone binding ion binding abscisic acid binding anion binding lipid binding carboxylic acid binding monocarboxylic acid binding small molecule binding	cellular response to stimulus regulation of cellular process response to stimulus response to lipid abscisic acid-activated signaling pathway signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus cellular response to abscisic acid stimulus regulation of biological process cellular response to stimulus regulation of cellular process response to stimulus response to lipid abscisic acid-activated signaling pathway signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus cellular response to abscisic acid stimulus regulation of biological process response to abscisic acid response to alcohol response to endogenous stimulus biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to alcohol response to chemical cellular response to lipid cellular process defense response response to stress	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR024949	Bet v I type allergen	Family
A, B	IPR000916	Bet v I/Major latex protein	Domain
A, B	IPR050279	Plant defense and hormone signaling protein	Family
A, B	IPR023393	START-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.