Annotations: 3GZT

VP7 recoated rotavirus DLP

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M [auth Q]	YgbB	e3gztQ1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
L [auth P]	YgbB	e3gztP1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
K [auth O]	YgbB	e3gztO1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
J [auth N]	YgbB	e3gztN1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
I [auth M]	YgbB	e3gztM1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
H [auth L]	YgbB	e3gztL1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
G [auth K]	YgbB	e3gztK1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
F [auth J]	YgbB	e3gztJ1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
E [auth I]	YgbB	e3gztI1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
D [auth H]	YgbB	e3gztH1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
C [auth G]	YgbB	e3gztG1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
B [auth F]	YgbB	e3gztF1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
A [auth B]	YgbB	e3gztB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
M [auth Q]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
M [auth Q]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
L [auth P]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
L [auth P]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
K [auth O]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
K [auth O]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
J [auth N]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
J [auth N]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
I [auth M]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
I [auth M]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
H [auth L]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
H [auth L]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
G [auth K]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
G [auth K]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
F [auth J]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
F [auth J]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
E [auth I]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
E [auth I]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
D [auth H]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
D [auth H]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
C [auth G]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
C [auth G]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
B [auth F]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
B [auth F]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)
A [auth B]	3.40.50.11130	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycoprotein VP7, domain 1	CATH (4.3.0)
A [auth B]	2.60.120.800	Mainly Beta	Sandwich	Jelly Rolls	Rotavirus outer-layer protein VP7, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], F [auth J], G [auth K], H [auth L], I [auth M], J [auth N], K [auth O], L [auth P], M [auth Q]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], F [auth J], G [auth K], H [auth L], I [auth M], J [auth N], K [auth O], L [auth P], M [auth Q]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], F [auth J], G [auth K], H [auth L], I [auth M], J [auth N], K [auth O], L [auth P], M [auth Q]	IPR001963	Glycoprotein VP7	Family
A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], A [auth B], B [auth F], C [auth G], D [auth H], E [auth I], F [auth J], G [auth K], H [auth L], I [auth M], J [auth N], K [auth O], L [auth P], M [auth Q]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3GZT | pdb_00003gzt

VP7 recoated rotavirus DLP

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage