3FXT | pdb_00003fxt

Crystal structure of the N-terminal domain of human NUDT6

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2B (2022-06-29)
A	SCOP2 Family	Nudix associated domain-like	8091069	4007721	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nudix associated domain-like	8091070	3002483	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e3fxtD1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
H		e3fxtH1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
G		e3fxtG1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
F		e3fxtF1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
E		e3fxtE1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
C		e3fxtC1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
B		e3fxtB1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: PF31240	F:	ECOD (20:10:01)
A		e3fxtA1	A: RING/U-box-like	X: RING/U-box-like	H: Rubredoxin-related	T: Nudix_hydro	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
H	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
G	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
F	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
E	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
C	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
B	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
A	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF18290	Nudix hydrolase domain (Nudix_hydro)	Nudix hydrolase domain	This domain is found just before the N-terminal region of nucleoside diphosphate-linked moiety (Nudix) hydrolases (Pfam:PF00293). Nudix hydrolases catalyze the hydrolysis of nucleoside diphosphates which are often toxic metabolic intermediates and si ...	This domain is found just before the N-terminal region of nucleoside diphosphate-linked moiety (Nudix) hydrolases (Pfam:PF00293). Nudix hydrolases catalyze the hydrolysis of nucleoside diphosphates which are often toxic metabolic intermediates and signalling molecules [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Nucleoside diphosphate-linked moiety X motif 6	pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity dinucleotide phosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity FAD diphosphatase activity NADH pyrophosphatase activity NAD binding binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity dinucleotide phosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity FAD diphosphatase activity NADH pyrophosphatase activity NAD binding binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding ADP-ribose diphosphatase activity	negative regulation of cell population proliferation regulation of biological process cell population proliferation regulation of cellular process regulation of cell population proliferation negative regulation of cellular process biological regulation negative regulation of biological process cellular process negative regulation of cell cycle cell cycle regulation of cell cycle	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003293	Nudix hydrolase 6-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR040618	Pre-nudix hydrolase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000086	NUDIX hydrolase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015797	NUDIX hydrolase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020084	NUDIX hydrolase, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: P53370	acne osteosarcoma pancreatic intraductal papillary-mucinous neoplasm malignant colon neoplasm ovarian cancer Pick disease malignant mesothelioma pancreatic ductal adenocarcinoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.