Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.
External Resource: Annotation
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
A | d3fifa1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
A | d3fifa2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
C | d3fifc1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
C | d3fifc2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
G | d3fifg1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
G | d3fifg2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d3fifb1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d3fifb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
D | d3fifd1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
D | d3fifd2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
E | d3fife1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
E | d3fife2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
F | d3fiff1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
F | d3fiff2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
H | d3fifh1 | All beta proteins | Sm-like fold | Sm-like ribonucleoproteins | YgdI/YgdR-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
H | d3fifh2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8034699 | 3000419 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF06004 | e3fifA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
C | PF06004 | e3fifC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
G | PF06004 | e3fifG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
B | PF06004 | e3fifB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
D | PF06004 | e3fifD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
E | PF06004 | e3fifE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
F | PF06004 | e3fifF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
H | PF06004 | e3fifH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF06004 | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| Uncharacterized lipoprotein ygdR | - | - | |
I [auth Y] | Uncharacterized ligand | - | - | - |