3ERP | pdb_00003erp

Structure of IDP01002, a putative oxidoreductase from and essential gene of Salmonella typhimurium

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3erpb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	NAD(P)-linked oxidoreductase	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
A	d3erpa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	NAD(P)-linked oxidoreductase	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Aldo-keto reductases (NADP)	8075508	4003124	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	NAD(P)-linked oxidoreductase	8075509	3000288	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	NAD(P)-linked oxidoreductase	8075509	3000288	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	HSP70	e3erpB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HSP70	ECOD (develop294)
A	PID	e3erpA1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: PID	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.20.100	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	NADP-dependent oxidoreductase domain	CATH (4.3.0)
A	3.20.20.100	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	NADP-dependent oxidoreductase domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00248	Aldo/keto reductase family (Aldo_ket_red)	Aldo/keto reductase family	This family includes a number of K+ ion channel beta chain regulatory domains - these are reported to have oxidoreductase activity [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative oxidoreductase	oxidoreductase activity catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	cellular response to stimulus response to ketone catabolic process response to stimulus ketone metabolic process detoxification methylglyoxal catabolic process cellular detoxification of aldehyde cellular response to methylglyoxal cellular response to aldehyde cellular detoxification of methylglyoxal ketone catabolic process small molecule metabolic process cellular response to ketone cellular response to stimulus response to ketone catabolic process response to stimulus ketone metabolic process detoxification methylglyoxal catabolic process cellular detoxification of aldehyde cellular response to methylglyoxal cellular response to aldehyde cellular detoxification of methylglyoxal ketone catabolic process small molecule metabolic process cellular response to ketone cellular detoxification response to oxygen-containing compound response to methylglyoxal cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular response to chemical stimulus response to chemical metabolic process cellular process aldehyde catabolic process small molecule catabolic process cellular response to toxic substance methylglyoxal metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023210	NADP-dependent oxidoreductase domain	Domain
A, B	IPR036812	NAD(P)-dependent oxidoreductase domain superfamily	Homologous Superfamily
A, B	IPR005399	Potassium channel, voltage-dependent, beta subunit, KCNAB-related	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.