3D1M | pdb_00003d1m

Crystal Structure of Sonic Hedgehog Bound to the third FNIII domain of CDO

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3d1ma_	Alpha and beta proteins (a+b)	Hedgehog/DD-peptidase	Hedgehog/DD-peptidase	Hedgehog (development protein), N-terminal signaling domain	Sonic hedgehog	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d3d1mb_	Alpha and beta proteins (a+b)	Hedgehog/DD-peptidase	Hedgehog/DD-peptidase	Hedgehog (development protein), N-terminal signaling domain	Sonic hedgehog	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d3d1mc_	All beta proteins	Immunoglobulin-like beta-sandwich	Fibronectin type III	Fibronectin type III	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3d1md_	All beta proteins	Immunoglobulin-like beta-sandwich	Fibronectin type III	Fibronectin type III	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Hedgehog (development protein), N-terminal signaling domain	8028022	4001392	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Hedgehog/DD-peptidase	8040401	3001458	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Hedgehog/DD-peptidase	8040401	3001458	SCOP2B (2022-06-29)
C	SCOP2 Family	Fibronectin type III	8086312	4007555	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Fibronectin type III	8086313	3002063	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Fibronectin type III	8086313	3002063	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3d1mA1	A: Hedgehog/DD-peptidase	X: Hedgehog/DD-peptidase	H: Hedgehog/DD-peptidase	T: HH_signal	F:	ECOD (20:10:01)
B		e3d1mB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
C		e3d1mC1	A: Profilin-like	X: sensor domains	H: sensor domains	T: V-set	F:	ECOD (20:10:01)
D		e3d1mD1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: HRM	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1380.10	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
B	3.30.1380.10	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Sonic hedgehog protein	patched binding protein binding binding signaling receptor binding catalytic activity, acting on a protein cholesterol-protein transferase activity transferase activity catalytic activity glycosaminoglycan binding carbohydrate derivative binding extracellular matrix binding laminin-1 binding laminin binding cation binding patched binding protein binding binding signaling receptor binding catalytic activity, acting on a protein cholesterol-protein transferase activity transferase activity catalytic activity glycosaminoglycan binding carbohydrate derivative binding extracellular matrix binding laminin-1 binding laminin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding calcium ion binding peptidase activity hydrolase activity	developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process regulation of biological process regulation of cellular process cellular developmental process regulation of developmental process biological regulation positive regulation of biological process regulation of cell differentiation regulation of striated muscle cell differentiation muscle cell differentiation developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process regulation of biological process regulation of cellular process cellular developmental process regulation of developmental process biological regulation positive regulation of biological process regulation of cell differentiation regulation of striated muscle cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation positive regulation of striated muscle cell differentiation cellular process striated muscle cell differentiation positive regulation of cellular process tongue development sensory organ development animal organ development positive regulation of cerebellar granule cell precursor proliferation positive regulation of cell population proliferation regulation of cerebellar granule cell precursor proliferation cell proliferation in external granule layer cell proliferation in hindbrain system development regulation of neural precursor cell proliferation head development cell population proliferation brain development nervous system development positive regulation of neural precursor cell proliferation central nervous system development regulation of cell population proliferation cerebellar granule cell precursor proliferation neural precursor cell proliferation hindbrain development myotube differentiation embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation tube morphogenesis embryo development ending in birth or egg hatching epithelial tube morphogenesis morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis neural tube formation anatomical structure formation involved in morphogenesis sensory organ morphogenesis animal organ morphogenesis tongue morphogenesis regulation of localization localization regulation of protein localization macromolecule localization protein localization to organelle regulation of protein localization to nucleus intracellular protein localization protein localization to nucleus lateral motor column neuron differentiation cell differentiation in spinal cord generation of neurons central nervous system neuron differentiation neurogenesis spinal cord development neuron differentiation somatic motor neuron differentiation ventral spinal cord development spinal cord motor neuron differentiation intein-mediated protein splicing primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process protein metabolic process macromolecule metabolic process protein splicing RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process sclerotome development mesenchyme development positive regulation of sclerotome development somite development regulation of sclerotome development negative regulation of locomotion regulation of cell motility negative regulation of biological process regulation of locomotion negative regulation of cellular process regulation of cell migration negative regulation of cell motility cell migration cell motility negative regulation of cell migration locomotion odontogenesis cell fate commitment digestive system development digestive tract development digestive tract mesoderm development mesoderm development negative regulation of sterol transport transport regulation of lipid transport negative regulation of transport organic hydroxy compound transport negative regulation of lipid localization regulation of cholesterol efflux sterol transport regulation of cholesterol transport regulation of sterol transport negative regulation of lipid transport regulation of transport lipid localization lipid transport negative regulation of cholesterol transport establishment of localization regulation of lipid localization negative regulation of cholesterol efflux cholesterol transport cholesterol efflux negative regulation of mesenchymal cell apoptotic process mesenchymal cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of mesenchymal cell apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death smooth muscle cell differentiation positive regulation of smooth muscle cell differentiation regulation of smooth muscle cell differentiation ureter smooth muscle development smooth muscle tissue development renal system development regulation of multicellular organismal process muscle organ development muscle tissue development ureter smooth muscle cell differentiation ureter development regulation of ureter smooth muscle cell differentiation regulation of muscle organ development positive regulation of ureter smooth muscle cell differentiation positive regulation of multicellular organismal process hindgut morphogenesis digestive tract morphogenesis hindgut development salivary gland cavitation gland development salivary gland development gland morphogenesis salivary gland morphogenesis tube lumen cavitation exocrine system development lung lobe morphogenesis respiratory tube development lung lobe development lung development respiratory system development lung morphogenesis thyroid gland development endocrine system development branching morphogenesis of an epithelial tube morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of smoothened signaling pathway signal transduction regulation of smoothened signaling pathway regulation of signaling cell surface receptor signaling pathway smoothened signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling tracheoesophageal septum formation heart development blood vessel morphogenesis vasculogenesis coronary vasculature development vasculature development circulatory system development vasculogenesis involved in coronary vascular morphogenesis coronary vasculature morphogenesis blood vessel development positive regulation of mesenchymal cell proliferation regulation of mesenchymal cell proliferation mesenchymal cell proliferation regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development T cell differentiation in thymus positive regulation of cell activation positive regulation of T cell differentiation in thymus T cell activation positive regulation of leukocyte activation T cell differentiation regulation of immune system process positive regulation of immune system process positive regulation of T cell activation positive regulation of cell development regulation of leukocyte cell-cell adhesion leukocyte differentiation cell development positive regulation of leukocyte cell-cell adhesion regulation of T cell differentiation in thymus lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of hemopoiesis regulation of cell-cell adhesion regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation immune system process regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation forebrain development diencephalon development thalamus development regulation of alpha-beta T cell activation negative regulation of cell adhesion negative regulation of T cell differentiation alpha-beta T cell activation negative regulation of hemopoiesis negative regulation of leukocyte differentiation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of lymphocyte differentiation negative regulation of multicellular organismal process negative regulation of leukocyte activation regulation of alpha-beta T cell differentiation negative regulation of alpha-beta T cell differentiation negative regulation of lymphocyte activation alpha-beta T cell differentiation negative regulation of cell differentiation negative regulation of developmental process negative regulation of cell activation negative regulation of cell development negative regulation of immune system process negative regulation of alpha-beta T cell activation telencephalon regionalization regionalization forebrain regionalization telencephalon development animal organ formation apoptotic signaling pathway negative regulation of T cell differentiation in thymus lateral mesoderm development determination of left/right asymmetry in lateral mesoderm determination of bilateral symmetry determination of left/right symmetry left/right pattern formation specification of symmetry cellular component organization intermediate filament organization intermediate filament-based process organelle organization cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization intermediate filament cytoskeleton organization left lung development cell fate specification protein autoprocessing negative regulation of kidney smooth muscle cell differentiation regulation of kidney smooth muscle cell differentiation negative regulation of muscle cell differentiation kidney smooth muscle cell differentiation negative regulation of smooth muscle cell differentiation cell differentiation involved in kidney development kidney smooth muscle tissue development kidney development positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of nervous system development oligodendrocyte progenitor proliferation regulation of neurogenesis positive regulation of oligodendrocyte progenitor proliferation regulation of gliogenesis positive regulation of gliogenesis regulation of nervous system development gliogenesis positive regulation of neurogenesis regulation of oligodendrocyte progenitor proliferation trachea development establishment of cell polarity establishment or maintenance of cell polarity kidney mesenchymal cell proliferation metanephric mesenchyme development metanephric mesenchymal cell proliferation involved in metanephros development cell proliferation involved in kidney development kidney mesenchyme development metanephros development cell proliferation involved in metanephros development positive regulation of cell division cell division regulation of cell division establishment of protein localization cellular localization nucleocytoplasmic transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of establishment of protein localization positive regulation of protein transport import into nucleus regulation of protein import into nucleus establishment of localization in cell protein import into nucleus positive regulation of intracellular transport regulation of intracellular transport positive regulation of protein localization to nucleus regulation of establishment of protein localization positive regulation of protein import into nucleus intracellular transport regulation of nucleocytoplasmic transport regulation of protein transport establishment of protein localization to organelle positive regulation of transport protein transport regulation of cellular localization positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport positive regulation of Wnt signaling pathway Wnt signaling pathway regulation of Wnt signaling pathway prostate gland development developmental growth reproductive process organ growth developmental process involved in reproduction prostate gland epithelium morphogenesis reproductive structure development prostate gland morphogenetic growth prostate gland growth axis elongation reproductive system development branch elongation of an epithelium growth urogenital system development developmental growth involved in morphogenesis prostate gland morphogenesis branching involved in prostate gland morphogenesis prostate epithelial cord elongation dorsal/ventral pattern formation dorsal/ventral neural tube patterning neural tube patterning catabolic process macromolecule catabolic process negative regulation of protein catabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of protein metabolic process negative regulation of metabolic process protein catabolic process regulation of catabolic process regulation of protein catabolic process mesonephric epithelium development kidney epithelium development nephron morphogenesis nephron tubule morphogenesis nephron epithelium morphogenesis nephron tubule development ureteric bud morphogenesis branching involved in ureteric bud morphogenesis renal tubule development nephron development nephron epithelium development ureteric bud development mesonephros development kidney morphogenesis mesonephric tubule morphogenesis mesonephric tubule development renal tubule morphogenesis neuron fate commitment neuron fate specification self proteolysis immune system development hematopoietic or lymphoid organ development thymus development bud outgrowth involved in lung branching angiogenesis eye development visual system development camera-type eye development sensory system development spinal cord dorsal/ventral patterning spinal cord patterning stem cell development neural crest cell differentiation neural crest cell development mesenchymal cell migration stem cell differentiation ameboidal-type cell migration mesenchymal cell differentiation neural crest cell migration commissural neuron axon guidance axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cell projection morphogenesis neuron projection morphogenesis plasma membrane bounded cell projection organization axon guidance axon development cell morphogenesis involved in neuron differentiation neuron projection guidance neuron development limb development appendage development embryonic limb morphogenesis embryonic appendage morphogenesis appendage morphogenesis limb morphogenesis lymphoid progenitor cell differentiation hematopoietic progenitor cell differentiation oligodendrocyte development glial cell development oligodendrocyte differentiation glial cell differentiation pancreas development polarity specification of anterior/posterior axis specification of axis polarity anterior/posterior pattern specification anterior/posterior axis specification axis specification regulation of epithelial cell proliferation involved in prostate gland development epithelial cell proliferation epithelial cell proliferation involved in prostate gland development regulation of epithelial cell proliferation positive regulation of DNA-templated transcription positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process embryonic organ morphogenesis embryonic digestive tract morphogenesis embryonic organ development embryonic digestive tract development branching involved in salivary gland morphogenesis male genitalia morphogenesis genitalia development male anatomical structure morphogenesis sex differentiation male sex differentiation male genitalia development genitalia morphogenesis regulation of penile erection regulation of reproductive process multicellular organismal reproductive process mating behavior behavior positive regulation of penile erection reproductive behavior penile erection copulation positive regulation of reproductive process thymic T cell selection negative thymic T cell selection negative T cell selection T cell selection right lung development foregut morphogenesis embryonic foregut morphogenesis mesenchymal smoothened signaling pathway involved in prostate gland development epithelial-mesenchymal signaling involved in prostate gland development epithelial-mesenchymal cell signaling cell-cell signaling myoblast differentiation regulation of dopaminergic neuron differentiation negative regulation of dopaminergic neuron differentiation dopaminergic neuron differentiation negative regulation of neuron differentiation regulation of neuron differentiation mesenchymal-epithelial cell signaling negative regulation of lymphocyte proliferation negative regulation of T cell proliferation negative regulation of leukocyte proliferation lymphocyte proliferation regulation of leukocyte proliferation mononuclear cell proliferation leukocyte proliferation negative regulation of mononuclear cell proliferation T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of animal organ morphogenesis regulation of odontogenesis regulation of anatomical structure morphogenesis epidermis development molting cycle process hair cycle epidermis morphogenesis skin development skin epidermis development hair follicle development molting cycle hair cycle process hair follicle morphogenesis embryonic hindlimb morphogenesis hindlimb morphogenesis proteasome-mediated ubiquitin-dependent protein catabolic process regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process negative regulation of ubiquitin-dependent protein catabolic process negative regulation of proteasomal ubiquitin-dependent protein catabolic process proteasomal protein catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process negative regulation of proteasomal protein catabolic process regulation of proteasomal protein catabolic process ubiquitin-dependent protein catabolic process collecting duct development metanephric collecting duct development mesenchymal cell proliferation involved in lung development branching involved in blood vessel morphogenesis negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of alpha-beta T cell activation positive regulation of alpha-beta T cell differentiation negative regulation of signaling negative regulation of cell communication negative regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction formation of anatomical boundary positive thymic T cell selection positive T cell selection positive regulation of epithelial cell proliferation positive regulation of epithelial cell proliferation involved in prostate gland development fungiform papilla development fungiform papilla morphogenesis striated muscle tissue development regulation of sprouting angiogenesis regulation of vasculature development positive regulation of sprouting angiogenesis positive regulation of angiogenesis sprouting angiogenesis positive regulation of vasculature development regulation of angiogenesis negative regulation of gene expression embryonic pattern specification positive regulation of skeletal muscle cell proliferation muscle cell proliferation skeletal muscle cell proliferation regulation of skeletal muscle cell proliferation striated muscle cell proliferation embryonic digit morphogenesis ectoderm development regulation of muscle tissue development skeletal muscle tissue development positive regulation of skeletal muscle tissue development regulation of skeletal muscle tissue development skeletal muscle organ development positive regulation of muscle organ development positive regulation of striated muscle tissue development regulation of striated muscle tissue development positive regulation of muscle tissue development regulation of body fluid levels wound healing hemostasis blood coagulation response to stress coagulation regulation of biological quality response to wounding neuroblast proliferation response to axon injury cellular response to metal ion cellular response to chemical stimulus response to lithium ion cellular response to lithium ion response to metal ion response to chemical limb bud formation neurotrophin production regulation of neurotrophin production positive regulation of neurotrophin production embryonic forelimb morphogenesis forelimb morphogenesis CD4-positive or CD8-positive, alpha-beta T cell lineage commitment T cell lineage commitment regulation of hormone levels steroid metabolic process androgen metabolic process hormone metabolic process lipid metabolic process ear development inner ear development regulation of proteolysis regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of canonical Wnt signaling pathway photoreceptor cell differentiation positive regulation of neuron differentiation positive regulation of photoreceptor cell differentiation regulation of photoreceptor cell differentiation transcription elongation by RNA polymerase II negative regulation of transcription elongation by RNA polymerase II regulation of DNA-templated transcription elongation regulation of transcription elongation by RNA polymerase II negative regulation of DNA-templated transcription, elongation DNA-templated transcription elongation artery development primary prostatic bud elongation negative regulation of ureter smooth muscle cell differentiation cell fate commitment involved in pattern specification ventral spinal cord interneuron specification ventral spinal cord interneuron differentiation cell fate specification involved in pattern specification ventral spinal cord interneuron fate commitment trachea morphogenesis skeletal system development embryonic skeletal system development zona limitans intrathalamica formation rostrocaudal neural tube patterning regulation of immature T cell proliferation positive regulation of immature T cell proliferation positive regulation of lymphocyte proliferation regulation of immature T cell proliferation in thymus positive regulation of T cell proliferation positive regulation of leukocyte proliferation immature T cell proliferation in thymus positive regulation of mononuclear cell proliferation positive regulation of immature T cell proliferation in thymus immature T cell proliferation positive regulation of transcription by RNA polymerase II heart morphogenesis embryonic heart tube development embryonic heart tube morphogenesis heart looping determination of heart left/right asymmetry midbrain development lung-associated mesenchyme development lung epithelium development positive regulation of mesenchymal cell proliferation involved in ureter development mesenchymal cell proliferation involved in ureter development odontogenesis of dentin-containing tooth import into cell endocytosis vesicle-mediated transport epithelial cell proliferation involved in salivary gland morphogenesis osteoblast development ossification osteoblast differentiation astrocyte differentiation Bergmann glial cell differentiation response to alcohol response to oxygen-containing compound response to ethanol positive regulation of locomotion regulation of response to external stimulus endothelial cell migration positive regulation of chemotaxis positive regulation of cell migration positive regulation of response to external stimulus taxis positive regulation of cell motility positive regulation of endothelial cell chemotaxis regulation of endothelial cell migration endothelial cell chemotaxis cell chemotaxis chemotaxis regulation of endothelial cell chemotaxis response to external stimulus regulation of chemotaxis positive regulation of endothelial cell migration lateral sprouting from an epithelium regulation of morphogenesis of an epithelium morphogenesis of an epithelial bud regulation of morphogenesis of a branching structure morphogenesis of an epithelial fold prostatic bud formation regulation of prostatic bud formation regulation of animal organ formation positive regulation of oligodendrocyte differentiation regulation of glial cell differentiation positive regulation of glial cell differentiation regulation of oligodendrocyte differentiation positive regulation of kidney smooth muscle cell differentiation regulation of neuroblast proliferation positive regulation of neuroblast proliferation fungiform papilla formation roof of mouth development	membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle cellular anatomical structure organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle cellular anatomical structure organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region extracellular space transport vesicle synapse intracellular vesicle presynapse cytoplasmic vesicle synaptic vesicle cell junction secretory vesicle vesicle exocytic vesicle cell periphery plasma membrane membrane extracellular matrix external encapsulating structure organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse Golgi apparatus cell body neuronal cell body nucleus nucleoplasm nuclear lumen Golgi membrane bounding membrane of organelle cell surface membrane microdomain membrane raft neuron to neuron synapse hippocampal mossy fiber to CA3 synapse axon postsynapse
C, D	Cell adhesion molecule	molecular transducer activity coreceptor activity signaling receptor activity	regulation of muscle tissue development multicellular organismal process regulation of developmental process skeletal muscle tissue development positive regulation of skeletal muscle tissue development positive regulation of biological process regulation of skeletal muscle tissue development striated muscle tissue development muscle structure development positive regulation of developmental process skeletal muscle organ development positive regulation of muscle organ development anatomical structure development regulation of multicellular organismal process regulation of muscle tissue development multicellular organismal process regulation of developmental process skeletal muscle tissue development positive regulation of skeletal muscle tissue development positive regulation of biological process regulation of skeletal muscle tissue development striated muscle tissue development muscle structure development positive regulation of developmental process skeletal muscle organ development positive regulation of muscle organ development anatomical structure development regulation of multicellular organismal process muscle tissue development muscle organ development developmental process regulation of biological process animal organ development biological regulation positive regulation of striated muscle tissue development regulation of striated muscle tissue development tissue development positive regulation of muscle tissue development regulation of muscle organ development positive regulation of multicellular organismal process cellular developmental process cell differentiation cellular process cell fate specification cell fate commitment neuroblast proliferation cell population proliferation nervous system development generation of neurons neurogenesis multicellular organism development neural precursor cell proliferation system development cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling smoothened signaling pathway cell communication signal transduction camera-type eye morphogenesis sensory organ development eye development embryonic morphogenesis visual system development retina development in camera-type eye embryo development retina morphogenesis in camera-type eye anatomical structure morphogenesis eye morphogenesis embryonic retina morphogenesis in camera-type eye sensory organ morphogenesis camera-type eye development animal organ morphogenesis sensory system development skeletal muscle cell differentiation skeletal muscle satellite cell differentiation lens development in camera-type eye negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication central nervous system neuron differentiation central nervous system development neuron differentiation response to nutrient levels response to lipid response to nutrient response to oxygen-containing compound response to vitamin cellular response to oxygen-containing compound cellular response to vitamin D cellular response to nutrient levels cellular response to chemical stimulus response to vitamin D cellular response to vitamin response to chemical cellular response to lipid cellular response to nutrient head development forebrain development brain development pallium development cerebral cortex development telencephalon development positive regulation of cell communication positive regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette positive regulation of cellular process positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade positive regulation of signaling regulation of cell differentiation positive regulation of neuron differentiation positive regulation of cell differentiation regulation of neuron differentiation embryonic body morphogenesis body morphogenesis cell adhesion myoblast fusion cell-cell fusion muscle cell differentiation myotube differentiation syncytium formation by plasma membrane fusion anatomical structure formation involved in morphogenesis syncytium formation striated muscle cell differentiation regulation of multicellular organismal development negative regulation of developmental process negative regulation of biomineral tissue development regulation of biomineral tissue development biomineral tissue development cell-cell adhesion small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction positive regulation of small GTPase mediated signal transduction positive regulation of nervous system development positive regulation of cell population proliferation regulation of neuroblast proliferation cell development regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of neurogenesis regulation of neural precursor cell proliferation positive regulation of cell development positive regulation of neural precursor cell proliferation regulation of cell population proliferation positive regulation of neuroblast proliferation positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process anterior/posterior pattern specification pattern specification process regionalization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001657	Hedgehog protein	Family
A, B	IPR006141	Intein N-terminal splicing region	PTM
A, B	IPR000320	Hedgehog, N-terminal signalling domain	Domain
A, B	IPR001767	Hedgehog protein, Hint domain	Domain
A, B	IPR050387	Hedgehog Signaling	Family
A, B	IPR036844	Hint domain superfamily	Homologous Superfamily
A, B	IPR009045	Peptidase M74/Hedgehog-like, zinc-binding domain superfamily	Homologous Superfamily
A, B	IPR003586	Hint domain C-terminal	Domain
A, B	IPR003587	Hint domain N-terminal	Domain
C, D	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C, D	IPR003598	Immunoglobulin subtype 2	Domain
C, D	IPR003599	Immunoglobulin domain subtype	Domain
C, D	IPR013098	Immunoglobulin I-set	Domain
C, D	IPR003961	Fibronectin type III	Domain
C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C, D	IPR007110	Immunoglobulin-like domain	Domain
C, D	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: Q4KMG0	holoprosencephaly 11 holoprosencephaly gastrointestinal stromal tumor pituitary stalk interruption syndrome osteosarcoma psoriasis transitional cell carcinoma adrenoleukodystrophy breast cancer ductal breast carcinoma in situ lobar holoprosencephaly lung carcinoma medulloblastoma ovarian cancer semilobar holoprosencephaly holoprosencephaly 11 holoprosencephaly gastrointestinal stromal tumor pituitary stalk interruption syndrome osteosarcoma psoriasis transitional cell carcinoma adrenoleukodystrophy breast cancer ductal breast carcinoma in situ lobar holoprosencephaly lung carcinoma medulloblastoma ovarian cancer semilobar holoprosencephaly alobar holoprosencephaly cystic fibrosis intellectual disability lung adenocarcinoma malignant colon neoplasm oligodendroglioma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor Duchenne muscular dystrophy invasive ductal breast carcinoma lung cancer malignant ependymoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.