Crystal structure of Tomato Aspermy Virus 2b in complex with siRNA
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth D] | Methyltransf_25 | e3cz3D1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: Nudix | F: Methyltransf_25 | ECOD (v294.1) |
| G [auth C] | Methyltransf_25 | e3cz3C1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: Nudix | F: Methyltransf_25 | ECOD (v294.1) |
| F [auth B] | Methyltransf_25 | e3cz3B1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: Nudix | F: Methyltransf_25 | ECOD (v294.1) |
| E [auth A] | DUF3244 | e3cz3A1 | A: a/b three-layered sandwiches | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: DUF3244 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| H [auth D] | 1.20.5.3800 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
| G [auth C] | 1.20.5.3800 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
| F [auth B] | 1.20.5.3800 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
| E [auth A] | 1.20.5.3800 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| E [auth A], F [auth B], G [auth C], H [auth D] | Protein 2b |
| ||
| B [auth F], D [auth H] | RNA (5'-R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*G)-3') | - | - | - |
| A [auth E], C [auth G] | RNA (5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*A)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| E [auth A], F [auth B], G [auth C], H [auth D] | IPR004946 | Cucumovirus protein 2B | Family |
