Crystal structure of transcriptional regulator (GntR family member) from Pseudomonas syringae pv. tomato str. DC3000
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | GntR | e3c7jB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
| B | FCD | e3c7jB2 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FCD | ECOD (1.6) |
| A | GntR | e3c7jA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
| A | FCD | e3c7jA2 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FCD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
| B | 1.20.120.530 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | GntR ligand-binding domain-like | CATH (4.3.0) |
| A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
| A | 1.20.120.530 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | GntR ligand-binding domain-like | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Transcriptional regulator, GntR family | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
| IPR008920 | Transcription regulator FadR/GntR, C-terminal | Homologous Superfamily | |
| IPR000524 | Transcription regulator HTH, GntR | Domain | |
| IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
| IPR011711 | GntR, C-terminal | Domain |
