3BDU | pdb_00003bdu

Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3bdue_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
G	d3bdug_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
F	d3bduf_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
D	d3bdud_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
C	d3bduc_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
B	d3bdub_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
A	d3bdua1	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
A	SCOP2 Family	YgdI/YgdR-like	8026696	4001696	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	DUF903	e3bduE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)
G	DUF903	e3bduG1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)
F	DUF903	e3bduF1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)
D	DUF903	e3bduD1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)
C	DUF903	e3bduC1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)
B	DUF903	e3bduB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)
A	DUF903	e3bduA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)
G	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)
F	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)
D	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)
C	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)
B	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)
A	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF06004	Bacterial protein of unknown function (DUF903) (DUF903)	Bacterial protein of unknown function (DUF903)	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR010920	LSM domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR010305	Lipoprotein YgdI/YgdR-like	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR047807	Lipoprotein YgdI/YgdR-like, SH3-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.