3BDU | pdb_00003bdu

Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3bdua1	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
B	d3bdub_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
C	d3bduc_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
D	d3bdud_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
E	d3bdue_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
F	d3bduf_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
G	d3bdug_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	YgdI/YgdR-like	Uncharacterized protein ECA1013	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YgdI/YgdR-like	8026696	4001696	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Sm-like ribonucleoproteins	8039075	3000419	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF903	e3bduA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF903	ECOD (v294.1)
B	KOW, Ribosomal_L26	e3bduB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (v294.1)
C	KOW, Ribosomal_L26	e3bduC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (v294.1)
D	KOW, Ribosomal_L26	e3bduD1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (v294.1)
E	KOW, Ribosomal_L26	e3bduE1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (v294.1)
F	KOW, Ribosomal_L26	e3bduF1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (v294.1)
G	KOW, Ribosomal_L26	e3bduG1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
B	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
C	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
D	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
E	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
F	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
G	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF06004	Bacterial protein of unknown function (DUF903) (DUF903)	Bacterial protein of unknown function (DUF903)	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR010920	LSM domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR010305	Lipoprotein YgdI/YgdR-like	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR047807	Lipoprotein YgdI/YgdR-like, Sm-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.