3ZWM | pdb_00003zwm

Crystal structure of ADP ribosyl cyclase complexed with substrate NAD and product cADPR

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3zwmh1	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
H	d3zwmh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
G	d3zwmg_	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
F	d3zwmf1	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
F	d3zwmf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
E	d3zwme1	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
E	d3zwme2	Artifacts	Tags	Tags	Tags	N-terminal Tags	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
D	d3zwmd1	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
D	d3zwmd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
C	d3zwmc1	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
C	d3zwmc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
B	d3zwmb1	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
B	d3zwmb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)
A	d3zwma_	Alpha and beta proteins (a/b)	Flavodoxin-like	N-(deoxy)ribosyltransferase-like	ADP ribosyl cyclase-like	automated matches	CALIFORNIA SEA HARE (Aplysia californica ) [TaxId: 6500 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8040192	3001392	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	WD40, eIF2A, Beta-prop_WDR5	e3zwmH1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
G	WD40, eIF2A, Beta-prop_WDR5	e3zwmG1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
F	WD40, eIF2A, Beta-prop_WDR5	e3zwmF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
E	WD40, eIF2A, Beta-prop_WDR5	e3zwmE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
D	WD40, eIF2A, Beta-prop_WDR5	e3zwmD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
C	WD40, eIF2A, Beta-prop_WDR5	e3zwmC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
B	WD40, eIF2A, Beta-prop_WDR5	e3zwmB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (v294.1)
A	Ribosomal_L24e	e3zwmA1	A: a/b three-layered sandwiches	X: Baculovirus p35 protein-related	H: RIFT-related	T: Phage tail proteins	F: Ribosomal_L24e	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	1.20.82.10	Mainly Alpha	Up-down Bundle	ADP Ribosyl Cyclase	Chain A, domain 1	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	ADP-RIBOSYL CYLCASE	hydrolase activity, acting on glycosyl bonds NAD+ nucleosidase activity, cyclic ADP-ribose generating hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity phosphorus-oxygen lyase activity lyase activity transferase activity	sexual reproduction reproductive process fertilization single fertilization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003193	ADP-ribosyl cyclase (CD38/157)	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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