3ZQ4
Unusual, dual endo- and exo-nuclease activity in the degradosome explained by crystal structure analysis of RNase J1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00753,PF07521 | e3zq4A2 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: PF00753,PF07521 | ECOD (1.6) |
A | PF17770 | e3zq4A1 | A: a+b complex topology | X: Flagellar protein FlgA N-terminal domain-like | H: RNase J C-terminal domain (From Topology) | T: RNase J C-terminal domain | F: PF17770 | ECOD (1.6) |
A | PF22505 | e3zq4A3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF22505 | ECOD (1.6) |
B [auth C] | PF00753,PF07521 | e3zq4C3 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: PF00753,PF07521 | ECOD (1.6) |
B [auth C] | PF17770 | e3zq4C1 | A: a+b complex topology | X: Flagellar protein FlgA N-terminal domain-like | H: RNase J C-terminal domain (From Topology) | T: RNase J C-terminal domain | F: PF17770 | ECOD (1.6) |
B [auth C] | PF22505 | e3zq4C2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF22505 | ECOD (1.6) |
C [auth D] | PF00753,PF07521 | e3zq4D3 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: PF00753,PF07521 | ECOD (1.6) |
C [auth D] | PF17770 | e3zq4D2 | A: a+b complex topology | X: Flagellar protein FlgA N-terminal domain-like | H: RNase J C-terminal domain (From Topology) | T: RNase J C-terminal domain | F: PF17770 | ECOD (1.6) |
C [auth D] | PF22505 | e3zq4D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF22505 | ECOD (1.6) |
D [auth E] | PF00753,PF07521 | e3zq4E3 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: PF00753,PF07521 | ECOD (1.6) |
D [auth E] | PF17770 | e3zq4E1 | A: a+b complex topology | X: Flagellar protein FlgA N-terminal domain-like | H: RNase J C-terminal domain (From Topology) | T: RNase J C-terminal domain | F: PF17770 | ECOD (1.6) |
D [auth E] | PF22505 | e3zq4E2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF22505 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth D], D [auth E] | PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain (RMMBL) | Zn-dependent metallo-hydrolase RNA specificity domain | - | Motif |
A, B [auth C], C [auth D], D [auth E] | PF17770 | Ribonuclease J C-terminal domain (RNase_J_C) | Ribonuclease J C-terminal domain | This domain is found at the C-terminus of Ribonuclease J proteins. Its function is unknown, but deletion of this domain causes dissociation to monomers [2]. | Domain |
A, B [auth C], C [auth D], D [auth E] | PF00753 | Metallo-beta-lactamase superfamily (Lactamase_B) | Metallo-beta-lactamase superfamily | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth D], D [auth E] | IPR001279 | Metallo-beta-lactamase | Domain |
A, B [auth C], C [auth D], D [auth E] | IPR001587 | Ribonuclease J, conserved site | Conserved Site |
A, B [auth C], C [auth D], D [auth E] | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain | Domain |
A, B [auth C], C [auth D], D [auth E] | IPR004613 | Ribonuclease J | Family |
A, B [auth C], C [auth D], D [auth E] | IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily |
A, B [auth C], C [auth D], D [auth E] | IPR030854 | Ribonuclease J, bacteria | Family |
A, B [auth C], C [auth D], D [auth E] | IPR041636 | Ribonuclease J, C-terminal | Domain |
A, B [auth C], C [auth D], D [auth E] | IPR042173 | Ribonuclease J, domain 2 | Homologous Superfamily |