3ZLA | pdb_00003zla

Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
B	SCOP2 Family	BUNV nucleocapsid protein-like	8048492	4006117	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Peptidase_M10	e3zlaH1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
G	Peptidase_M10	e3zlaG1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
F	Peptidase_M10	e3zlaF1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
E	Peptidase_M10	e3zlaE1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
D	Peptidase_M10	e3zlaD1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
C	Peptidase_M10	e3zlaC1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
B	Peptidase_M10	e3zlaB1	A: a/b three-layered sandwiches	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (v294.1)
A	Glutaredoxin	e3zlaA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Glutaredoxin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
H	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
G	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
G	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
F	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
F	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
E	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
E	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
D	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
D	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
C	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
C	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
B	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
B	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
A	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
A	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00952	Bunyavirus nucleocapsid (N) protein (Bunya_nucleocap)	Bunyavirus nucleocapsid (N) protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, J	RNA	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H	NUCLEOPROTEIN	RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR043011	Bunyavirus nucleocapsid (N) , C-terminal domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR043012	Bunyavirus nucleocapsid (N) , N-terminal domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001784	Bunyavirus nucleocapsid (N) protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.