3ZK4 | pdb_00003zk4

Structure of purple acid phosphatase PPD1 isolated from yellow lupin (Lupinus luteus) seeds

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Pur_ac_phosph_N_1	e3zk4C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pur_ac_phosph_N_1	ECOD (1.6)
C	PPD1_N	e3zk4C2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PPD1_N	ECOD (1.6)
C	PhoD_1	e3zk4C3	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: Metallo-dependent phosphatases (From Topology)	T: Metallo-dependent phosphatases	F: PhoD_1	ECOD (1.6)
B	Pur_ac_phosph_N_1	e3zk4B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pur_ac_phosph_N_1	ECOD (1.6)
B	PPD1_N	e3zk4B3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PPD1_N	ECOD (1.6)
B	PhoD_1	e3zk4B1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: Metallo-dependent phosphatases (From Topology)	T: Metallo-dependent phosphatases	F: PhoD_1	ECOD (1.6)
A	Pur_ac_phosph_N_1	e3zk4A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pur_ac_phosph_N_1	ECOD (1.6)
A	PPD1_N	e3zk4A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PPD1_N	ECOD (1.6)
A	PhoD_1	e3zk4A3	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: Metallo-dependent phosphatases (From Topology)	T: Metallo-dependent phosphatases	F: PhoD_1	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	DIPHOSPHONUCLEOTIDE PHOSPHATASE 1	phosphoric ester hydrolase activity acid phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR025733	Purple acid phosphatase, C-terminal domain	Domain
A, B, C	IPR040974	Purple acid phosphatase, Fn3-like domain	Domain
A, B, C	IPR041792	Purple acid phosphatase, metallophosphatase domain	Domain
A, B, C	IPR015914	Purple acid phosphatase, N-terminal	Domain
A, B, C	IPR008963	Purple acid phosphatase-like, N-terminal	Homologous Superfamily
A, B, C	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
A, B, C	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.