3ZHG | pdb_00003zhg

Crystallographic structure of the native mouse SIGN-R1 CRD domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3zhgc_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	HOUSE MOUSE (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d3zhgb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	HOUSE MOUSE (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d3zhga_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	HOUSE MOUSE (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d3zhgd_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	HOUSE MOUSE (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	C-type lectin-like	8065462	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8065462	3001261	SCOP2B (2022-06-29)
A	SCOP2 Family	C-type lectin domain	8065461	4002453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8065462	3001261	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8065462	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Choline_kinase, EcKL	e3zhgC1	A: a/b three-layered sandwiches	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Choline_kinase, EcKL	ECOD (v294.1)
B	Choline_kinase, EcKL	e3zhgB1	A: a/b three-layered sandwiches	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Choline_kinase, EcKL	ECOD (v294.1)
A	Choline_kinase, EcKL	e3zhgA1	A: a/b three-layered sandwiches	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Choline_kinase, EcKL	ECOD (v294.1)
D	Choline_kinase, EcKL	e3zhgD1	A: a/b three-layered sandwiches	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Choline_kinase, EcKL	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain
D	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	CD209 ANTIGEN-LIKE PROTEIN B	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding protein binding virus receptor activity exogenous protein binding polysaccharide binding (1->3)-beta-D-glucan binding calcium-dependent protein binding molecular transducer activity pattern recognition receptor activity signaling receptor activity binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding protein binding virus receptor activity exogenous protein binding polysaccharide binding (1->3)-beta-D-glucan binding calcium-dependent protein binding molecular transducer activity pattern recognition receptor activity signaling receptor activity cation binding ion binding metal ion binding	response to stimulus immune response immune system process biological process involved in interspecies interaction between organisms detection of external biotic stimulus response to other organism response to external stimulus detection of biotic stimulus response to biotic stimulus detection of stimulus response to yeast response to fungus response to external biotic stimulus detection of other organism response to stimulus immune response immune system process biological process involved in interspecies interaction between organisms detection of external biotic stimulus response to other organism response to external stimulus detection of biotic stimulus response to biotic stimulus detection of stimulus response to yeast response to fungus response to external biotic stimulus detection of other organism detection of fungus detection of yeast localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport detection of bacterium response to bacterium regulation of localization positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of biological process cellular component organization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis positive regulation of cellular process regulation of endocytosis regulation of biological process regulation of transport biological regulation regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport multicellular organismal process regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of biosynthetic process tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process phagocytosis, recognition cell recognition	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane
D	CD209 ANTIGEN-LIKE PROTEIN B	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding protein binding virus receptor activity exogenous protein binding polysaccharide binding (1->3)-beta-D-glucan binding calcium-dependent protein binding molecular transducer activity pattern recognition receptor activity signaling receptor activity binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding protein binding virus receptor activity exogenous protein binding polysaccharide binding (1->3)-beta-D-glucan binding calcium-dependent protein binding molecular transducer activity pattern recognition receptor activity signaling receptor activity cation binding ion binding metal ion binding	response to stimulus immune response immune system process biological process involved in interspecies interaction between organisms detection of external biotic stimulus response to other organism response to external stimulus detection of biotic stimulus response to biotic stimulus detection of stimulus response to yeast response to fungus response to external biotic stimulus detection of other organism response to stimulus immune response immune system process biological process involved in interspecies interaction between organisms detection of external biotic stimulus response to other organism response to external stimulus detection of biotic stimulus response to biotic stimulus detection of stimulus response to yeast response to fungus response to external biotic stimulus detection of other organism detection of fungus detection of yeast localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport detection of bacterium response to bacterium regulation of localization positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of biological process cellular component organization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis positive regulation of cellular process regulation of endocytosis regulation of biological process regulation of transport biological regulation regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport multicellular organismal process regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of biosynthetic process tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process phagocytosis, recognition cell recognition	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C	IPR033989	CD209-like, C-type lectin-like domain	Domain
A, B, C	IPR001304	C-type lectin-like	Domain
A, B, C	IPR018378	C-type lectin, conserved site	Conserved Site
A, B, C	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B, C	IPR050111	C-type lectin and snaclec domain-containing protein	Family
D	IPR016187	C-type lectin fold	Homologous Superfamily
D	IPR033989	CD209-like, C-type lectin-like domain	Domain
D	IPR001304	C-type lectin-like	Domain
D	IPR018378	C-type lectin, conserved site	Conserved Site
D	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
D	IPR050111	C-type lectin and snaclec domain-containing protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.