3WYE | pdb_00003wye

Crystal Structure of chimeric engineered (2S,3S)-butanediol dehydrogenase complexed with NAD+

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3wyeb_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ], (Corynebacterium glutamicum ) [TaxId: 1718 ], (Klebsiella pneumoniae ) [TaxId: 573 ], (Corynebacterium glutamicum ) [TaxId: 1718 ], (Klebsiella pneumoniae ) [TaxId: 573 ], (Corynebacterium glutamicum ) [TaxId: 1718 ], (Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
A	d3wyea_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ], (Corynebacterium glutamicum ) [TaxId: 1718 ], (Klebsiella pneumoniae ) [TaxId: 573 ], (Corynebacterium glutamicum ) [TaxId: 1718 ], (Klebsiella pneumoniae ) [TaxId: 573 ], (Corynebacterium glutamicum ) [TaxId: 1718 ], (Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	adh_short_C2	e3wyeB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: adh_short_C2	ECOD (1.6)
A	adh_short_C2	e3wyeA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: adh_short_C2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming]	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors acetoin dehydrogenase (NAD+) activity catalytic activity diacetyl reductase ((S)-acetoin forming) (NAD+) activity NAD+ binding NAD binding binding nucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors acetoin dehydrogenase (NAD+) activity catalytic activity diacetyl reductase ((S)-acetoin forming) (NAD+) activity NAD+ binding NAD binding binding nucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding heterocyclic compound binding small molecule binding NADH binding (S,S)-butanediol dehydrogenase activity quinone binding	acetoin catabolic process alcohol catabolic process catabolic process ketone metabolic process alcohol metabolic process secondary alcohol metabolic process acetoin metabolic process ketone catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process acetoin catabolic process alcohol catabolic process catabolic process ketone metabolic process alcohol metabolic process secondary alcohol metabolic process acetoin metabolic process ketone catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process monocarboxylic acid metabolic process lipid metabolic process butanediol metabolic process polyol metabolic process diol metabolic process glycol metabolic process protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR014007	Acetoin reductase	Family
A, B	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B	IPR057326	Ketoreductase domain	Domain
A, B	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site
A, B	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site
A, B	IPR014007	Acetoin reductase	Family
A, B	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.