3WX7 | pdb_00003wx7

Crystal structure of COD

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	CBM_5_12	e3wx7B1	A: beta meanders	X: WW domain-like	H: Carbohydrate binding domain (From Topology)	T: Carbohydrate binding domain	F: CBM_5_12	ECOD (1.6)
B	Polysacc_deac_1	e3wx7B2	A: a/b barrels	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase (From Topology)	T: Glycoside hydrolase/deacetylase	F: Polysacc_deac_1	ECOD (1.6)
A	CBM_5_12	e3wx7A1	A: beta meanders	X: WW domain-like	H: Carbohydrate binding domain (From Topology)	T: Carbohydrate binding domain	F: CBM_5_12	ECOD (1.6)
A	Polysacc_deac_1	e3wx7A2	A: a/b barrels	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase (From Topology)	T: Glycoside hydrolase/deacetylase	F: Polysacc_deac_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.20.370	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycoside hydrolase/deacetylase	CATH (4.3.0)
B	2.10.10.90	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
A	3.20.20.370	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycoside hydrolase/deacetylase	CATH (4.3.0)
A	2.10.10.90	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02839	Carbohydrate-binding module family 5/12 (CBM_5_12)	Carbohydrate-binding module family 5/12	-	Family
A, B	PF01522	Polysaccharide deacetylase (Polysacc_deac_1)	Polysaccharide deacetylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Chitin oligosaccharide deacetylase	binding carbohydrate binding hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Homologous Superfamily
A, B	IPR050248	Polysaccharide deacetylase, ArnD subfamily	Family
A, B	IPR003610	Carbohydrate binding module family 5/12	Domain
A, B	IPR002509	NodB homology domain	Domain
A, B	IPR036573	Carbohydrate-binding module superfamily 5/12	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.