3WSY | pdb_00003wsy

SorLA Vps10p domain in complex with its own propeptide fragment


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySortilin-like 8044712 4004094 SCOP2 (2022-06-29)
ASCOP2 FamilySortilin C-terminal domain-like 8052041 4007575 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyVps10p beta-propeller domain-like 8052034 3002084 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySortilin C-terminal domain-like 8052042 3002085 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASortilin-Vps10e3wsyA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 10-bladedF: Sortilin-Vps10ECOD (1.6)
ASortilin_C_2nde3wsyA3 A: few secondary structure elementsX: Sortilin C-terminal domain (From Topology)H: Sortilin C-terminal domain (From Topology)T: Sortilin C-terminal domainF: Sortilin_C_2ndECOD (1.6)
ASortilin_C_1ste3wsyA2 A: few secondary structure elementsX: Sortilin C-terminal domain (From Topology)H: Sortilin C-terminal domain (From Topology)T: Sortilin C-terminal domainF: Sortilin_C_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.60.270 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2) domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF15902Sortilin, neurotensin receptor 3, (Sortilin-Vps10)Sortilin, neurotensin receptor 3,- Repeat
PF15901Sortilin, neurotensin receptor 3, C-terminal (Sortilin_C)Sortilin, neurotensin receptor 3, C-terminalSortilin_C is the C-terminal cytoplasmic tail of sortilin, a Vps10p domain-containing family of proteins [1,2]. Most sortilin is expressed within intracellular compartments, where it chaperones diverse ligands, including proBDNF and acid hydrolases. ...Sortilin_C is the C-terminal cytoplasmic tail of sortilin, a Vps10p domain-containing family of proteins [1,2]. Most sortilin is expressed within intracellular compartments, where it chaperones diverse ligands, including proBDNF and acid hydrolases. The sortilin cytoplasmic tail is homologous to mannose 6-phosphate receptor and is required for the intracellular trafficking of cargo proteins via interactions with distinct adaptor molecules [3,4]. In addition to mediating lysosomal targeting of specific acid hydrolases, the sortilin cytoplasmic tail also directs trafficking of BDNF to the secretory pathway in neurons, where it can be released in response to depolarisation to modulate cell survival and synaptic plasticity [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth C]peptide from Sortilin-related receptor
Sortilin-related receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth C]IPR031777Sortilin, C-terminalDomain
B [auth C]IPR050310VPS10-related sortilin family receptorsFamily
B [auth C]IPR036055LDL receptor-like superfamilyHomologous Superfamily
B [auth C]IPR000033LDLR class B repeatRepeat
B [auth C]IPR006581VPS10Domain
B [auth C]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth C]IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
B [auth C]IPR031778Sortilin, N-terminalDomain
B [auth C]IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
B [auth C]IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
B [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth C]IPR003961Fibronectin type IIIDomain
B [auth C]IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR031777Sortilin, C-terminalDomain
IPR050310VPS10-related sortilin family receptorsFamily
IPR036055LDL receptor-like superfamilyHomologous Superfamily
IPR000033LDLR class B repeatRepeat
IPR006581VPS10Domain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
IPR031778Sortilin, N-terminalDomain
IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR003961Fibronectin type IIIDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth C]PharosQ92673
PharosQ92673