3WRW | pdb_00003wrw

Crystal structure of the N-terminal domain of resistance protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Acetyltransf_9	e3wrwF1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
F	Glyco_hydro_106	e3wrwF2	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Glyco_hydro_106	ECOD (v294.1)
E	Acetyltransf_9	e3wrwE1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
E	Glyco_hydro_106	e3wrwE2	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Glyco_hydro_106	ECOD (v294.1)
D	Acetyltransf_9	e3wrwD1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
D	Glyco_hydro_106	e3wrwD2	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Glyco_hydro_106	ECOD (v294.1)
C	Acetyltransf_9	e3wrwC1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
C	Glyco_hydro_106	e3wrwC2	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Glyco_hydro_106	ECOD (v294.1)
B	UPF0261	e3wrwB1	A: a/b three-layered sandwiches	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related	T: Resistance protein Tm-1 first domain	F: UPF0261	ECOD (v294.1)
B	YcaO	e3wrwB2	A: a/b three-layered sandwiches	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related	T: P40 nucleoprotein-related	F: YcaO	ECOD (v294.1)
A	Acetyltransf_9	e3wrwA1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
A	Glyco_hydro_106	e3wrwA2	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Glyco_hydro_106	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.12020	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NN domain	CATH (4.3.0)
F	3.40.50.12030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NC domain	CATH (4.3.0)
E	3.40.50.12020	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NN domain	CATH (4.3.0)
E	3.40.50.12030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NC domain	CATH (4.3.0)
D	3.40.50.12020	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NN domain	CATH (4.3.0)
D	3.40.50.12030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NC domain	CATH (4.3.0)
C	3.40.50.12020	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NN domain	CATH (4.3.0)
C	3.40.50.12030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NC domain	CATH (4.3.0)
B	3.40.50.12020	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NN domain	CATH (4.3.0)
B	3.40.50.12030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NC domain	CATH (4.3.0)
A	3.40.50.12020	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NN domain	CATH (4.3.0)
A	3.40.50.12030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein family UPF0261, NC domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF23189	Uncharacterised protein family (UPF0261) C-terminal domain (UPF0261_C)	Uncharacterised protein family (UPF0261) C-terminal domain		Domain
A, B, C, D, E A, B, C, D, E, F	PF06792	Uncharacterised protein family (UPF0261) N-terminal domain (UPF0261)	Uncharacterised protein family (UPF0261) N-terminal domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Tm-1 protein	catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus RNA metabolic process viral life cycle primary metabolic process host-mediated perturbation of viral process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus RNA metabolic process viral life cycle primary metabolic process host-mediated perturbation of viral process nucleobase-containing compound biosynthetic process host-mediated perturbation of viral RNA genome replication macromolecule biosynthetic process nucleic acid metabolic process host-mediated perturbation of symbiont process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process modulation of process of another organism	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR051353	Tobamovirus Resistance UPF0261	Family
A, B, C, D, E A, B, C, D, E, F	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR009215	TIM-barrel domain, IGPS-like	Domain
A, B, C, D, E A, B, C, D, E, F	IPR044122	UPF0261, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR056778	UPF0261, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.