3WFP | pdb_00003wfp

tRNA processing enzyme (apo form 2)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HD,PolyA_pol_RNAbd	e3wfpH1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
H	PolyA_pol	e3wfpH2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
G	HD,PolyA_pol_RNAbd	e3wfpG1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
G	PolyA_pol	e3wfpG2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
F	HD,PolyA_pol_RNAbd	e3wfpF1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
F	PolyA_pol	e3wfpF2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
E	HD,PolyA_pol_RNAbd	e3wfpE1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
E	PolyA_pol	e3wfpE2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
D	HD,PolyA_pol_RNAbd	e3wfpD1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
D	PolyA_pol	e3wfpD2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
C	HD,PolyA_pol_RNAbd	e3wfpC1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
C	PolyA_pol	e3wfpC2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
B	HD,PolyA_pol_RNAbd	e3wfpB1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
B	PolyA_pol	e3wfpB2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)
A	HD,PolyA_pol_RNAbd	e3wfpA1	A: alpha complex topology	X: PDEase-like	H: Poly A polymerase C-terminal region-like (From Topology)	T: Poly A polymerase C-terminal region-like	F: HD,PolyA_pol_RNAbd	ECOD (1.6)
A	PolyA_pol	e3wfpA2	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PolyA_pol	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01966	HD domain (HD)	HD domain	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H	PF12627	Probable RNA and SrmB- binding site of polymerase A (PolyA_pol_RNAbd)	Probable RNA and SrmB- binding site of polymerase A	This region encompasses much of the RNA and SrmB binding motifs on polymerase A.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF01743	Poly A polymerase head domain (PolyA_pol)	Poly A polymerase head domain	This family includes nucleic acid independent RNA polymerases, such as Poly(A) polymerase, which adds the poly (A) tail to mRNA EC:2.7.7.19. This family also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA EC:2.7.7.25 ...	This family includes nucleic acid independent RNA polymerases, such as Poly(A) polymerase, which adds the poly (A) tail to mRNA EC:2.7.7.19. This family also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA EC:2.7.7.25. This family is part of the nucleotidyltransferase superfamily.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Poly A polymerase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding CCACCA tRNA nucleotidyltransferase activity cytidylyltransferase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding CCACCA tRNA nucleotidyltransferase activity cytidylyltransferase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups CC tRNA cytidylyltransferase activity RNA binding tRNA binding nucleic acid binding cation binding ion binding metal ion binding	catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process tRNA metabolic process tRNA surveillance nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process RNA surveillance catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process tRNA metabolic process tRNA surveillance nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process RNA surveillance tRNA decay RNA catabolic process tRNA 3'-terminal CCA addition gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process tRNA processing RNA 3'-end processing RNA processing tRNA 3'-end processing	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003607	HD/PDEase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006675	HDIG domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050124	tRNA CCA-adding enzyme	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002646	Poly A polymerase, head domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR032828	tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006674	HD domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.