3W15 | pdb_00003w15

Structure of peroxisomal targeting signal 2 (PTS2) of Saccharomyces cerevisiae 3-ketoacyl-CoA thiolase in complex with Pex7p and Pex21p

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3w15c1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	automated matches	yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], yeast (Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d3w15c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], yeast (Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Type 2 solute binding protein-like	8058187	3000083	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ANAPC4_WD40_19	e3w15A2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_19	ECOD (1.6)
C	SBP_bac_1_C	e3w15C1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_C	ECOD (1.6)
C	SBP_bac_1_N_1	e3w15C2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.2.0)
B	6.10.280.230	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
C	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
C	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Peroxisomal targeting signal 2 receptor	peroxisome matrix targeting signal-2 binding signal sequence binding binding peroxisome targeting sequence binding peptide binding	cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular component organization or biogenesis intracellular protein localization cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular component organization or biogenesis intracellular protein localization establishment of protein localization to peroxisome intracellular protein transmembrane transport intracellular transport protein import into peroxisome matrix establishment of localization peroxisomal transport transmembrane transport organelle organization establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization cellular process intracellular protein transport protein import into peroxisome matrix, docking	protein-containing complex cellular anatomical structure membrane membrane protein complex cargo receptor complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex cellular anatomical structure membrane membrane protein complex cargo receptor complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle cytosol microbody membrane bounding membrane of organelle peroxisomal membrane organelle membrane peroxisomal matrix membrane-enclosed lumen intracellular organelle lumen organelle lumen microbody lumen
B	Peroxisomal membrane protein PEX21	protein carrier chaperone molecular carrier activity	cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular component organization or biogenesis intracellular protein localization cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular component organization or biogenesis intracellular protein localization establishment of protein localization to peroxisome intracellular protein transmembrane transport intracellular transport protein import into peroxisome matrix establishment of localization peroxisomal transport transmembrane transport organelle organization establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization cellular process intracellular protein transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle bounding membrane of organelle organelle peroxisomal membrane microbody cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle bounding membrane of organelle organelle peroxisomal membrane microbody organelle membrane protein-containing complex membrane protein complex cargo receptor complex
C	3-ketoacyl-CoA thiolase, peroxisomal, Maltose-binding periplasmic protein	transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity RNA binding nucleic acid binding mRNA binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility locomotion localization transport carbohydrate transport oligosaccharide transport disaccharide transport establishment of localization maltose transport polysaccharide localization dextrin transport macromolecule localization maltodextrin transmembrane transport polysaccharide transport response to disaccharide response to oxygen-containing compound detection of maltose stimulus detection of stimulus response to carbohydrate detection of chemical stimulus detection of disaccharide stimulus response to maltose detection of carbohydrate stimulus catabolic process benzene-containing compound metabolic process oxoacid metabolic process cellular response to xenobiotic stimulus carboxylic acid metabolic process organic acid catabolic process organic acid metabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus monocarboxylic acid catabolic process carboxylic acid catabolic process phenylacetate catabolic process metabolic process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process fatty acid metabolic process lipid catabolic process primary metabolic process lipid modification fatty acid catabolic process fatty acid oxidation fatty acid beta-oxidation lipid oxidation lipid metabolic process	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space outer membrane-bounded periplasmic space cell envelope membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle peroxisomal matrix membrane-enclosed lumen intracellular organelle lumen organelle lumen microbody lumen mitochondrial intermembrane space mitochondrion organelle envelope lumen organelle envelope mitochondrial envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR019775	WD40 repeat, conserved site	Conserved Site
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A	IPR001680	WD40 repeat	Repeat
A	IPR044536	Peroxisomal targeting signal 2 receptor	Family
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR056940	PEX18/PEX21, C-terminal domain	Domain
C	IPR006061	Solute-binding family 1, conserved site	Conserved Site
C	IPR006060	Maltose/Cyclodextrin ABC transporter, substrate-binding protein	Family
C	IPR006059	Bacterial-type extracellular solute-binding protein	Family
C	IPR050215	Thiolase-like superfamily, Thiolase	Family
C	IPR002155	Thiolase	Family
C	IPR016039	Thiolase-like	Homologous Superfamily
C	IPR020617	Thiolase, C-terminal	Domain
C	IPR020616	Thiolase, N-terminal	Domain
C	IPR020613	Thiolase, conserved site	Conserved Site
C	IPR020610	Thiolase, active site	Active Site
C	IPR020615	Thiolase, acyl-enzyme intermediate active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.