3VSM | pdb_00003vsm

The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3vsmA1	A: a/b three-layered sandwiches	X: jelly-roll	H: Hyaluronate lyase-like, C-terminal domain	T: Hyaluronate lyase-like, C-terminal domain	F:	ECOD (v294.1)
A	Baculo_E66	e3vsmA2	A: a/b three-layered sandwiches	X: jelly-roll	H: Hyaluronate lyase-like, C-terminal domain	T: Hyaluronate lyase-like, C-terminal domain	F: Baculo_E66	ECOD (v294.1)
A	Baculo_E66	e3vsmA3	A: a/b three-layered sandwiches	X: jelly-roll	H: Hyaluronate lyase-like, C-terminal domain	T: Hyaluronate lyase-like, C-terminal domain	F: Baculo_E66	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.50.10.100	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Chondroitin AC/alginate lyase	CATH (4.3.0)
A	2.70.98.100	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
A	2.60.40.4340	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08124	Polysaccharide lyase family 8, N terminal alpha-helical domain (Lyase_8_N)	Polysaccharide lyase family 8, N terminal alpha-helical domain	-	Repeat
A	PF04850	Baculovirus E66 occlusion-derived virus envelope protein (Baculo_E66)	Baculovirus E66 occlusion-derived virus envelope protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Occlusion-derived virus envelope protein E66	lyase activity catalytic activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component viral membrane viral envelope virion membrane host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR012970	Polysaccharide lyase 8, N-terminal alpha-helical	Domain
A	IPR043082	Baculovirus occlusion-derived virus envelope, E66, core domain	Homologous Superfamily
A	IPR008929	Chondroitin AC/alginate lyase	Homologous Superfamily
A	IPR006934	Baculovirus ODV-E66, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.