3VC2 | pdb_00003vc2

Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl diphosphate, and S-adenosyl-L-homocysteine

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Cupin_2	e3vc2L3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
K	Cupin_2	e3vc2K3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
J	Cupin_2	e3vc2J3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
I	Cupin_2	e3vc2I3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
H	Cupin_2	e3vc2H3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
G	Cupin_2	e3vc2G3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
F	Cupin_2	e3vc2F3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
E	Cupin_2	e3vc2E3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
D	Methyltr_RsmB-F	e3vc2D2	A: alpha arrays	X: POZ domain	H: POZ domain	T: POZ domain	F: Methyltr_RsmB-F	ECOD (v295.2)
C	Cupin_2	e3vc2C3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
B	Cupin_2	e3vc2B3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)
A	Cupin_2	e3vc2A3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Cupin_2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
K	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
J	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
I	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
H	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
G	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
F	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
E	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
D	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
C	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF08241	Methyltransferase domain (Methyltransf_11)	Methyltransferase domain	Members of this family are SAM dependent methyltransferases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Geranyl diphosphate 2-C-methyltransferase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity catalytic activity C-methyltransferase activity S-adenosyl-L-methionine binding sulfur compound binding	terpene metabolic process metabolic process cellular process primary metabolic process hydrocarbon metabolic process isoprenoid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050447	Erg6/SMT methyltransferase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049645	Geranyl diphosphate 2-C-methyltransferase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013216	Methyltransferase type 11	Domain