3V6I
Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase at 2.25 A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | VAPG-like | 8101875 | 3002722 | SCOP2B (2022-06-29) |
C [auth X] | SCOP2 Family | VATG-like | 8046464 | 4005096 | SCOP2 (2022-06-29) |
C [auth X] | SCOP2 Superfamily | VAPG-like | 8101875 | 3002722 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | vATP-synt_E_C | e3v6iA1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
A | EUF08781 | e3v6iA2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: EUF08781 | ECOD (1.6) |
D [auth Y] | vATP-synt_E_C | e3v6iY1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
D [auth Y] | EUF08781 | e3v6iY2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: EUF08781 | ECOD (1.6) |
B | V-ATPase_G_2 | e3v6iB1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G_2 | ECOD (1.6) |
C [auth X] | V-ATPase_G_2 | e3v6iX2 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.620 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | F1F0 ATP synthase subunit B, membrane domain | CATH (4.3.0) |
A | 3.30.2320.30 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | ATP synthase, E subunit, C-terminal | CATH (4.3.0) |
D [auth Y] | 1.20.5.620 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | F1F0 ATP synthase subunit B, membrane domain | CATH (4.3.0) |
D [auth Y] | 3.30.2320.30 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | ATP synthase, E subunit, C-terminal | CATH (4.3.0) |
B | 1.20.5.2950 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C [auth X] | 1.20.5.2950 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth Y] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth Y] | IPR002842 | V-type ATPase subunit E | Family |
A, D [auth Y] | IPR038495 | V-type ATPase subunit E, C-terminal domain superfamily | Homologous Superfamily |