3V21 | pdb_00003v21

Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3v21h_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
G	d3v21g_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
F	d3v21f_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
E	d3v21e_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
D	d3v21d_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
C	d3v21c_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
B	d3v21b_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
A	d3v21a_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Bse634I	e3v21H1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
G	Bse634I	e3v21G1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
F	Bse634I	e3v21F1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
E	Bse634I	e3v21E1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
D	Bse634I	e3v21D1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
C	Bse634I	e3v21C1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
B	Bse634I	e3v21B1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
A	Bse634I	e3v21A1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
G	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
F	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
E	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
D	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
C	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
B	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
A	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Endonuclease Bse634IR	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-
I, J, K, L, M, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth V], T [auth X], U [auth Y], V [auth Z]	DNA (5'-D(TPTPCPGPAPCPCPGPGPTPCPGP*A)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012415	Restriction endonuclease, type II, Cfr10I/Bse634I	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.