3UJM | pdb_00003ujm

Crystal structure of the NTF2-like domain of the Drosophila melanogaster Rasputin protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3ujmb1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)
B	d3ujmb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)
A	d3ujma1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)
A	d3ujma2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	NTF2-like	8080243	3000472	SCOP2B (2022-06-29)
A	SCOP2 Family	NTF2-like	8080242	4001021	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NTF2-like	8080243	3000472	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Cathelicidins	e3ujmB1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Cathelicidins	ECOD (develop294)
A	Bse634I	e3ujmA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Bse634I	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
A	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Rasputin	RNA binding binding nucleic acid binding mRNA binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity RNA binding binding nucleic acid binding mRNA binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA	multicellular organismal process compound eye photoreceptor fate commitment cellular developmental process sensory organ development photoreceptor cell differentiation visual system development eye morphogenesis multicellular organism development neurogenesis compound eye morphogenesis neuron differentiation cell differentiation eye photoreceptor cell differentiation photoreceptor cell fate commitment anatomical structure development multicellular organismal process compound eye photoreceptor fate commitment cellular developmental process sensory organ development photoreceptor cell differentiation visual system development eye morphogenesis multicellular organism development neurogenesis compound eye morphogenesis neuron differentiation cell differentiation eye photoreceptor cell differentiation photoreceptor cell fate commitment anatomical structure development animal organ morphogenesis sensory system development system development developmental process eye photoreceptor cell fate commitment eye development neuron fate commitment animal organ development nervous system development generation of neurons anatomical structure morphogenesis compound eye development sensory organ morphogenesis compound eye photoreceptor cell differentiation cellular process cell fate commitment morphogenesis of follicular epithelium sexual reproduction reproductive process cell development cellular process involved in reproduction in multicellular organism pattern specification process dorsal/ventral axis specification, ovarian follicular epithelium establishment or maintenance of cell polarity developmental process involved in reproduction female gamete generation epithelial cell differentiation gamete generation follicle cell of egg chamber development establishment or maintenance of polarity of follicular epithelium epithelium development oogenesis multicellular organismal reproductive process dorsal/ventral axis specification morphogenesis of an epithelium tissue development regionalization dorsal/ventral pattern formation tissue morphogenesis epithelial cell development germ cell development axis specification regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process response to nutrient levels response to stimulus response to stress response to amino acid starvation response to starvation cellular component biogenesis cellular component organization organelle organization cellular component assembly stress granule assembly organelle assembly membraneless organelle assembly cellular component organization or biogenesis establishment of ommatidial planar polarity establishment of tissue polarity morphogenesis of a polarized epithelium ommatidial rotation establishment of planar polarity	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex precatalytic spliceosome cytoplasmic ribonucleoprotein granule intracellular membraneless organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex precatalytic spliceosome cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule catalytic step 2 spliceosome catalytic complex cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A, B	IPR000504	RNA recognition motif domain	Domain
A, B	IPR018222	Nuclear transport factor 2, eukaryote	Domain
A, B	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B	IPR002075	Nuclear transport factor 2 domain	Domain
A, B	IPR039539	Ras GTPase-activating protein-binding protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.