Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyUbiquitin-like8043638 3000157 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRan-GTPase activating protein 1 (RanGAP1) C-terminal domain8081380 3001897 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUQ_cone3uioA1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)
BRad60-SLDe3uioB1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Rad60-SLDECOD (1.6)
CRanGAP1_Ce3uioC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ras GEF (From Topology)T: Ras GEFF: RanGAP1_CECOD (1.6)
DIR1-Me3uioD1 A: extended segmentsX: E3 SUMO-protein ligase RanBP2 fragment (From Topology)H: E3 SUMO-protein ligase RanBP2 fragment (From Topology)T: E3 SUMO-protein ligase RanBP2 fragmentF: IR1-MECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain
PF11976Ubiquitin-2 like Rad60 SUMO-like (Rad60-SLD)Ubiquitin-2 like Rad60 SUMO-like- Family
PF07834RanGAP1 C-terminal domain (RanGAP1_C)RanGAP1 C-terminal domainRan-GTPase activating protein 1 (RanGAP1, Swiss:P46061) is a GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Its C-terminal domain is required for RanGAP1 localisation at ...Ran-GTPase activating protein 1 (RanGAP1, Swiss:P46061) is a GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Its C-terminal domain is required for RanGAP1 localisation at the vertebrate nuclear pore complex, and is sumoylated by the small ubiquitin-related modifier protein (SUMO-1, Swiss:Q93068). This domain is composed almost entirely of helical substructures that are organised into an alpha-alpha superhelix fold, with the exception of the peptide containing the lysine residue required for SUMO-1 conjugation [1].
Domain
PF12185Nup358/RanBP2 E3 ligase domain (IR1-M)Nup358/RanBP2 E3 ligase domainThis domain family is found in eukaryotes, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00638, Pfam:PF00641, Pfam:PF00160. There are two conserved sequence motifs: TFFC and EDF. Nup358/RanBP2 is a nucl ...This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00638, Pfam:PF00641, Pfam:PF00160. There are two conserved sequence motifs: TFFC and EDF. Nup358/RanBP2 is a nucleoporin involved in ubiquitination of many different protein targets from various cellular pathways. It complexes with Ubc9, SUMO-1 and RanGAP1 to perform this function. This is the ligase domain which binds to Ubc9.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SUMO-conjugating enzyme UBC9
Small ubiquitin-related modifier 2
Ran GTPase-activating protein 1
E3 SUMO-protein ligase RanBP2

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP63279
PharosP61956
PharosP46060
PharosP49792

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
CSD Parent Component: CYS

RESIDAA0262

PSI-MOD :  L-cysteine sulfinic acid MOD:00267
CSD Parent Component: CYS

RESIDAA0262 , AA0262

PSI-MOD :  L-cysteine sulfinic acid MOD:00267 , L-cysteine sulfinic acid MOD:00267