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3UF1
Crystal Structure of Vimentin (fragment 144-251) from Homo sapiens, Northeast Structural Genomics Consortium Target HR4796B
External Resource: Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
,
B
,
C
,
D
PF00038
Intermediate filament protein (Filament)
Intermediate filament protein
-
Coiled-coil
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
,
B
,
C
,
D
Vimentin
protein binding
binding
protein domain specific binding
RNA binding
double-stranded RNA binding
organic cyclic compound binding
nucleic acid binding
scaffold protein binding
keratin filament binding
intermediate filament binding
structural molecule activity
structural constituent of eye lens
structural constituent of cytoskeleton
molecular adaptor activity
protein binding
binding
protein domain specific binding
RNA binding
double-stranded RNA binding
organic cyclic compound binding
nucleic acid binding
scaffold protein binding
keratin filament binding
intermediate filament binding
structural molecule activity
structural constituent of eye lens
structural constituent of cytoskeleton
molecular adaptor activity
identical protein binding
Less
developmental process
multicellular organismal process
epithelium development
cellular developmental process
sensory organ development
eye development
animal organ development
cell development
visual system development
tissue development
lens fiber cell development
epithelial cell differentiation
multicellular organism development
epithelial cell development
cell differentiation
developmental process
multicellular organismal process
epithelium development
cellular developmental process
sensory organ development
eye development
animal organ development
cell development
visual system development
tissue development
lens fiber cell development
epithelial cell differentiation
multicellular organism development
epithelial cell development
cell differentiation
anatomical structure development
camera-type eye development
lens fiber cell differentiation
cellular process
sensory system development
lens development in camera-type eye
system development
regulation of cellular process
negative regulation of biological process
negative regulation of cellular metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
post-transcriptional regulation of gene expression
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of biological quality
RNA catabolic process
mRNA catabolic process
regulation of biological process
cellular metabolic process
negative regulation of metabolic process
primary metabolic process
regulation of cellular metabolic process
negative regulation of cellular biosynthetic process
nucleobase-containing compound catabolic process
regulation of gene expression
negative regulation of gene expression
biosynthetic process
negative regulation of macromolecule biosynthetic process
nucleic acid catabolic process
metabolic process
regulation of macromolecule biosynthetic process
macromolecule metabolic process
regulation of metabolic process
catabolic process
cellular biosynthetic process
RNA metabolic process
macromolecule catabolic process
regulation of mRNA catabolic process
negative regulation of cellular process
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
biological regulation
regulation of macromolecule metabolic process
regulation of catabolic process
gene expression
mRNA metabolic process
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of mRNA stability
regulation of cellular biosynthetic process
negative regulation of biosynthetic process
regulation of RNA stability
regulation of mRNA metabolic process
positive regulation of biological process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of metabolic process
positive regulation of biosynthetic process
positive regulation of macromolecule metabolic process
positive regulation of cellular process
positive regulation of gene expression
positive regulation of cellular biosynthetic process
cellular response to stimulus
biological process involved in interspecies interaction between organisms
response to lipid
response to stimulus
response to other organism
cellular response to lipopolysaccharide
response to oxygen-containing compound
response to external stimulus
cellular response to molecule of bacterial origin
response to lipopolysaccharide
cellular response to oxygen-containing compound
response to biotic stimulus
cellular response to biotic stimulus
cellular response to chemical stimulus
response to chemical
response to bacterium
cellular response to lipid
response to external biotic stimulus
response to molecule of bacterial origin
regulation of neuron projection development
regulation of cellular component organization
cell projection organization
neuron projection development
cellular component organization
neurogenesis
neuron differentiation
cellular component organization or biogenesis
negative regulation of cell projection organization
plasma membrane bounded cell projection organization
negative regulation of cellular component organization
regulation of cell projection organization
nervous system development
negative regulation of neuron projection development
generation of neurons
neuron development
regulation of plasma membrane bounded cell projection organization
astrocyte differentiation
glial cell development
astrocyte development
central nervous system development
gliogenesis
glial cell differentiation
cellular response to nitrogen compound
response to organonitrogen compound
response to endogenous stimulus
cellular response to muramyl dipeptide
response to muramyl dipeptide
response to nitrogen compound
cellular response to endogenous stimulus
cellular response to organonitrogen compound
Bergmann glial cell differentiation
immune response
defense response
response to type II interferon
response to cytokine
defense response to symbiont
cellular response to type II interferon
response to peptide
immune system process
defense response to other organism
response to stress
innate immune response
cellular response to cytokine stimulus
collagen biosynthetic process
regulation of collagen biosynthetic process
regulation of collagen metabolic process
positive regulation of collagen metabolic process
positive regulation of collagen biosynthetic process
collagen metabolic process
intermediate filament organization
intermediate filament-based process
organelle organization
supramolecular fiber organization
cytoskeleton organization
intermediate filament cytoskeleton organization
Less
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
organelle lumen
organelle
nuclear periphery
nuclear lumen
nuclear matrix
anchoring junction
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
organelle lumen
organelle
nuclear periphery
nuclear lumen
nuclear matrix
anchoring junction
cell junction
focal adhesion
cell-substrate junction
extracellular exosome
extracellular vesicle
extracellular organelle
extracellular region
extracellular space
vesicle
extracellular membrane-bounded organelle
polymeric cytoskeletal fiber
intermediate filament cytoskeleton
cytoskeleton
intracellular non-membrane-bounded organelle
intermediate filament
supramolecular fiber
supramolecular polymer
supramolecular complex
non-membrane-bounded organelle
cytoplasm
cytosol
cell leading edge
intracellular vesicle
phagocytic vesicle
cytoplasmic vesicle
endocytic vesicle
cell periphery
plasma membrane
membrane
peroxisome
microbody
microtubule organizing center
microtubule cytoskeleton
axon
cell projection
neuron projection
plasma membrane bounded cell projection
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
,
B
,
C
,
D
IPR018039
Intermediate filament protein, conserved site
Conserved Site
A
,
B
,
C
,
D
IPR050405
Intermediate filament structural protein
Family
A
,
B
,
C
,
D
IPR039008
Intermediate filament, rod domain
Domain
A
,
B
,
C
,
D
IPR006821
Intermediate filament head, DNA-binding domain
Domain
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
,
B
,
C
,
D
Pharos
: 
P08670
cataract 30
synovial sarcoma
cataract
pulverulent cataract
cirrhosis of liver
motor neuron disease
Neoplasm Metastasis
acute coronary syndrome
lateral sclerosis
breast carcinoma
carcinosarcoma
retinal disease
nephrosis
amyotrophic lateral sclerosis type 1
malignant mesothelioma
cataract 30
synovial sarcoma
cataract
pulverulent cataract
cirrhosis of liver
motor neuron disease
Neoplasm Metastasis
acute coronary syndrome
lateral sclerosis
breast carcinoma
carcinosarcoma
retinal disease
nephrosis
amyotrophic lateral sclerosis type 1
malignant mesothelioma
prostate cancer
Sjogren syndrome
ulcerative colitis
Duchenne muscular dystrophy
neurodegenerative disease
glioblastoma
osteoarthritis susceptibility 1
invasive ductal breast carcinoma
ovarian cancer
astrocytic tumor
pancreatic intraductal papillary-mucinous neoplasm
breast cancer
cancer
malignant ependymoma
pituitary cancer
cystic fibrosis
subependymal giant cell astrocytoma
myopathy
Emery-Dreifuss muscular dystrophy
ischemia reperfusion injury
pancreatic ductal adenocarcinoma
atypical teratoid rhabdoid tumor
pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia
lung cancer
malignant glioma
primitive neuroectodermal tumor
malignant pancreatic neoplasm
medulloblastoma
Down syndrome
drug-induced liver injury
essential tremor
gastric carcinoma
osteoarthritis
osteosarcoma
anterior horn disease
juvenile dermatomyositis
pancreatic intraductal papillary-mucinous carcinoma
Becker muscular dystrophy
limb-girdle muscular dystrophy
peritoneal neoplasm
breast fibroadenoma
lung carcinoma
pilocytic astrocytoma
Less
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