Annotations: 3U95

Crystal structure of a putative alpha-glucosidase from Thermotoga neapolitana

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3u95f1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
F	d3u95f2	Alpha and beta proteins (a+b)	LDH C-terminal domain-like	LDH C-terminal domain-like	AglA-like glucosidase	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
E	d3u95e1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
E	d3u95e2	Alpha and beta proteins (a+b)	LDH C-terminal domain-like	LDH C-terminal domain-like	AglA-like glucosidase	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
D	d3u95d1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
D	d3u95d2	Alpha and beta proteins (a+b)	LDH C-terminal domain-like	LDH C-terminal domain-like	AglA-like glucosidase	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
C	d3u95c1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
C	d3u95c2	Alpha and beta proteins (a+b)	LDH C-terminal domain-like	LDH C-terminal domain-like	AglA-like glucosidase	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
B	d3u95b1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
B	d3u95b2	Alpha and beta proteins (a+b)	LDH C-terminal domain-like	LDH C-terminal domain-like	AglA-like glucosidase	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
A	d3u95a1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
A	d3u95a2	Alpha and beta proteins (a+b)	LDH C-terminal domain-like	LDH C-terminal domain-like	AglA-like glucosidase	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	LDH/MDH/AglA-like	8064586	3000039	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	LDH/MDH/AglA-like	8064586	3000039	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	LDH/MDH/AglA-like	8064586	3000039	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	LDH/MDH/AglA-like	8064586	3000039	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LDH/MDH/AglA-like	8064586	3000039	SCOP2B (2022-06-29)
A	SCOP2 Family	AglA-like	8064585	4000089	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LDH/MDH/AglA-like	8064586	3000039	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	ABC_tran	e3u95F1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
E	ABC_tran	e3u95E1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
D	ABC_tran	e3u95D1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
C	ABC_tran	e3u95C1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
B	ABC_tran	e3u95B1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
A	Avidin	e3u95A1	A: a/b three-layered sandwiches	X: Globin-like	H: Nucleoside diphosphate kinases	T: Nucleoside diphosphate kinases	F: Avidin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.1820.10	Alpha Beta	Alpha-Beta Complex	LDH C-terminal domain-like	AglA-like glucosidase	CATH (4.3.0)
E	3.90.1820.10	Alpha Beta	Alpha-Beta Complex	LDH C-terminal domain-like	AglA-like glucosidase	CATH (4.3.0)
D	3.90.1820.10	Alpha Beta	Alpha-Beta Complex	LDH C-terminal domain-like	AglA-like glucosidase	CATH (4.3.0)
C	3.90.1820.10	Alpha Beta	Alpha-Beta Complex	LDH C-terminal domain-like	AglA-like glucosidase	CATH (4.3.0)
B	3.90.1820.10	Alpha Beta	Alpha-Beta Complex	LDH C-terminal domain-like	AglA-like glucosidase	CATH (4.3.0)
A	3.90.1820.10	Alpha Beta	Alpha-Beta Complex	LDH C-terminal domain-like	AglA-like glucosidase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Glycoside hydrolase, family 4	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR022616	Glycosyl hydrolase, family 4, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR053487	Alpha-glycosidase	Family
A, B, C, D, E A, B, C, D, E, F	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR053715	Glycosyl Hydrolase 4 Enzyme Superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR015955	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001088	Glycoside hydrolase, family 4	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.