3U41 | pdb_00003u41

Crystal structure of Escherichia coli DmsD in space group P212121

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3u41h_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
G	d3u41g_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
F	d3u41f_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d3u41e_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d3u41d_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d3u41c_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d3u41b_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d3u41a_	All alpha proteins	TorD-like	TorD-like	TorD-like	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TorD-like	8087694	3001633	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	V-set	e3u41H1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
G	V-set	e3u41G1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
F	V-set	e3u41F1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
E	V-set	e3u41E1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
D	V-set	e3u41D1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
C	V-set	e3u41C1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
B	V-set	e3u41B1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (v294.1)
A	p450	e3u41A1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: p450	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
G	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
F	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
E	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
D	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
C	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
B	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)
A	1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02613	Nitrate reductase delta subunit (Nitrate_red_del)	Nitrate reductase delta subunit	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Twin-arginine leader-binding protein dmsD	signal sequence binding binding peptide binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR028611	Tat proofreading chaperone DmsD	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020945	DMSO/Nitrate reductase chaperone	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036411	TorD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050289	TorD/DmsD family chaperones	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR026269	Tat proofreading chaperone DmsD-type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.