3TPU | pdb_00003tpu

42F3 p5E8/H2-Ld complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth I]	SCOP2B Superfamily	MHC antigen-recognition domain	8034809	3000521	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	MHC antigen-recognition domain	8034809	3000521	SCOP2B (2022-06-29)
O [auth Q]	SCOP2B Superfamily	MHC antigen-recognition domain	8034809	3000521	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	MHC antigen-recognition domain	8034809	3000521	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40, eIF2A, Beta-prop_WDR5	e3tpuA1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
E [auth C]	WD40, eIF2A, Beta-prop_WDR5	e3tpuC1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
I [auth G]	WD40, eIF2A, Beta-prop_WDR5	e3tpuG1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
M	WD40, eIF2A, Beta-prop_WDR5	e3tpuM1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
B	V-set	e3tpuB3	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: V-set	ECOD (develop294)
F [auth D]	V-set	e3tpuD3	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: V-set	ECOD (develop294)
J [auth H]	V-set	e3tpuH3	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: V-set	ECOD (develop294)
N	V-set	e3tpuN3	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: V-set	ECOD (develop294)
C [auth I]	WD40, eIF2A, Beta-prop_WDR5	e3tpuI1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
G [auth E]	WD40, eIF2A, Beta-prop_WDR5	e3tpuE1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
O [auth Q]	WD40, eIF2A, Beta-prop_WDR5	e3tpuQ1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)
K	WD40, eIF2A, Beta-prop_WDR5	e3tpuK1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
E [auth C]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
I [auth G]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
M	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
F [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
J [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
N	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C [auth I]	3.30.500.10	Alpha Beta	2-Layer Sandwich	Murine Class I Major Histocompatibility Complex, H2-DB	Chain A, domain 1	CATH (4.3.0)
G [auth E]	3.30.500.10	Alpha Beta	2-Layer Sandwich	Murine Class I Major Histocompatibility Complex, H2-DB	Chain A, domain 1	CATH (4.3.0)
O [auth Q]	3.30.500.10	Alpha Beta	2-Layer Sandwich	Murine Class I Major Histocompatibility Complex, H2-DB	Chain A, domain 1	CATH (4.3.0)
K	3.30.500.10	Alpha Beta	2-Layer Sandwich	Murine Class I Major Histocompatibility Complex, H2-DB	Chain A, domain 1	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A, E [auth C], I [auth G], M	TR 42F3	TR-ALPHA	Chimeric (chimeric)	TRAV9D-301, TRAJ5801, TRAC*01	V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA	TR	TR-ALPHA_BETA-2	IMGT (202610-0)
B, F [auth D], J [auth H], N	TR 42F3	TR-BETA-2	Chimeric (chimeric)	TRBV13-102, TRBJ2-201, TRBC201, TRBC202	V-DOMAIN V-BETA, C-DOMAIN C-BETA-2	TR	TR-ALPHA_BETA-2	IMGT (202610-0)
C [auth I], G [auth E], K, O [auth Q]	MH1 H2-Ld SBM2	G-ALPHA1-ALPHA2	Mus musculus (house mouse)	H2-Ld-2	G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2	MH	(G-ALPHA1-ALPHA2)	IMGT (202610-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth I], G [auth E], K, O [auth Q]	PF00129	Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)	Class I Histocompatibility antigen, domains alpha 1 and 2		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E [auth C], I [auth G], M	42F3 alpha	-	-	-
B, F [auth D], J [auth H], N	42F3 beta	-	-	-
D [auth J], H [auth F], L, P [auth R]	p5E8 peptide	-	-	-
C [auth I], G [auth E], K, O [auth Q]	H2-Ld SBM2	binding antigen binding peptide antigen binding peptide binding protein binding protein-folding chaperone binding TAP1 binding TAP binding 14-3-3 protein binding natural killer cell lectin-like receptor binding signaling receptor binding TAP complex binding protein-containing complex binding beta-2-microglobulin binding binding antigen binding peptide antigen binding peptide binding protein binding protein-folding chaperone binding TAP1 binding TAP binding 14-3-3 protein binding natural killer cell lectin-like receptor binding signaling receptor binding TAP complex binding protein-containing complex binding beta-2-microglobulin binding T cell receptor binding identical protein binding CD8 receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity protein homodimerization activity protein dimerization activity MHC class I protein binding MHC protein binding TAP2 binding	antigen processing and presentation immune system process antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway antigen processing and presentation of endogenous peptide antigen antigen processing and presentation of peptide antigen via MHC class I antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent antigen processing and presentation of peptide antigen antigen processing and presentation of endogenous antigen antigen processing and presentation of endogenous peptide antigen via MHC class I response to stimulus defense response response to stress adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity antigen processing and presentation immune system process antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway antigen processing and presentation of endogenous peptide antigen antigen processing and presentation of peptide antigen via MHC class I antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent antigen processing and presentation of peptide antigen antigen processing and presentation of endogenous antigen antigen processing and presentation of endogenous peptide antigen via MHC class I response to stimulus defense response response to stress adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity positive regulation of leukocyte mediated immunity regulation of cellular process positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of biological process positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of immune response positive regulation of leukocyte mediated cytotoxicity leukocyte mediated immunity regulation of immune system process positive regulation of immune effector process positive regulation of adaptive immune response positive regulation of immune system process positive regulation of cellular process regulation of T cell mediated immunity T cell mediated cytotoxicity regulation of biological process positive regulation of T cell mediated cytotoxicity immune response regulation of adaptive immune response biological regulation regulation of leukocyte mediated cytotoxicity leukocyte mediated cytotoxicity adaptive immune response immune effector process regulation of leukocyte mediated immunity regulation of T cell mediated cytotoxicity regulation of lymphocyte mediated immunity regulation of response to stimulus positive regulation of T cell mediated immunity regulation of immune response regulation of cell killing cellular process positive regulation of cell killing cell killing antigen processing and presentation of endogenous peptide antigen via MHC class Ib antigen processing and presentation of peptide antigen via MHC class Ib antigen processing and presentation via MHC class Ib	membrane-bounded organelle intracellular anatomical structure cis-Golgi network membrane Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure bounding membrane of organelle cis-Golgi network organelle cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure cis-Golgi network membrane Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure bounding membrane of organelle cis-Golgi network organelle cytoplasm organelle membrane cell periphery cell surface plasma membrane external side of plasma membrane side of membrane MHC class I protein complex MHC protein complex protein-containing complex plasma membrane protein complex membrane protein complex endoplasmic reticulum exit site endoplasmic reticulum MHC class Ib protein complex intracellular vesicle phagocytic vesicle phagocytic vesicle membrane cytoplasmic vesicle membrane cytoplasmic vesicle vesicle membrane endocytic vesicle membrane vesicle endocytic vesicle vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome Golgi membrane MHC class I peptide loading complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane extracellular region extracellular space Golgi apparatus subcompartment Golgi cisterna Golgi stack Golgi medial cisterna early endosome endosome lumenal side of endoplasmic reticulum membrane lumenal side of membrane endosome membrane early endosome membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth I], G [auth E], K, O [auth Q]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C [auth I], G [auth E], K, O [auth Q]	IPR010579	MHC class I, alpha chain, C-terminal	Domain
C [auth I], G [auth E], K, O [auth Q]	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
C [auth I], G [auth E], K, O [auth Q]	IPR001039	MHC class I alpha chain, alpha1 alpha2 domains	Domain
C [auth I], G [auth E], K, O [auth Q]	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
C [auth I], G [auth E], K, O [auth Q]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C [auth I], G [auth E], K, O [auth Q]	IPR007110	Immunoglobulin-like domain	Domain
C [auth I], G [auth E], K, O [auth Q]	IPR050208	Antigen-presenting and immune regulatory MHC class I-related	Family
C [auth I], G [auth E], K, O [auth Q]	IPR003597	Immunoglobulin C1-set	Domain
C [auth I], G [auth E], K, O [auth Q]	IPR011161	MHC class I-like antigen recognition-like	Domain
C [auth I], G [auth E], K, O [auth Q]	IPR037055	MHC class I-like antigen recognition-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.