3TA5 | pdb_00003ta5

Cobalt bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyNHEJ phosphoesterases-like 8092048 3002555 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae3ta5A1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: Sulfotransfer_3F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13298DNA Ligase D 3'-phosphoesterase domain (LigD_N)DNA Ligase D 3'-phosphoesterase domainThis entry represents a 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, which is involved along with bacterial Ku protein in non-homologous end joining [1]- the less common of two general mechanisms of repairing doubl ...This entry represents a 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, which is involved along with bacterial Ku protein in non-homologous end joining [1]- the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent DNA ligase, N-terminal domain protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR014144DNA ligase D, 3'-phosphoesterase domainDomain