3SZH | pdb_00003szh

Crystal structure of apo shwanavidin (P1 form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3szhf_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)
E	d3szhe_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)
D	d3szhd_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)
C	d3szhc1	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)
C	d3szhc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)
B	d3szhb_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)
A	d3szha_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	(Shewanella denitrificans OS217 ) [TaxId: 318161 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Avidin/streptavidin	8070814	3001465	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Avidin/streptavidin	8070814	3001465	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Avidin/streptavidin	8070814	3001465	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Avidin/streptavidin	8070814	3001465	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Avidin/streptavidin	8070814	3001465	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Avidin/streptavidin	8070814	3001465	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RRM_1	e3szhF1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
E	RRM_1	e3szhE1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
D	RRM_1	e3szhD1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
C	RRM_1	e3szhC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
B	RRM_1	e3szhB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
A	Pkinase, Kdo	e3szhA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Pkinase, Kdo	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
E	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
D	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
C	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
B	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
A	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01382	Avidin family (Avidin)	Avidin family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Avidin/streptavidin	biotin binding organic acid binding binding vitamin binding ion binding anion binding carboxylic acid binding heterocyclic compound binding monocarboxylic acid binding small molecule binding sulfur compound binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036896	Avidin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005468	Avidin/streptavidin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.