3SGG | pdb_00003sgg

Crystal structure of a putative hydrolase (BT_2193) from Bacteroides thetaiotaomicron VPI-5482 at 1.25 A resolution

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyBT_2193 N-terminal domain-like 8045123 4004304 SCOP2 (2022-06-29)
ASCOP2 FamilyBT_2193 C-terminal domain-like 8049874 4006670 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCWBR2-like 8056029 3002334 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyGlycoside hydrolase/deacetylase 8056026 3001025 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCWBR2-like 8056027 3002334 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCWBR2-like 8056028 3002334 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGxGYxYP_Ce3sggA4 A: a/b barrelsX: TIM beta/alpha-barrelH: Glycoside hydrolase/deacetylase (From Topology)T: Glycoside hydrolase/deacetylaseF: GxGYxYP_CECOD (1.6)
AGxGYxYP_N_3rde3sggA3 A: a/b three-layered sandwichesX: Endolysin C-terminal domain (From Topology)H: Endolysin C-terminal domain (From Topology)T: Endolysin C-terminal domainF: GxGYxYP_N_3rdECOD (1.6)
AGxGYxYP_N_1ste3sggA1 A: a/b three-layered sandwichesX: Endolysin C-terminal domain (From Topology)H: Endolysin C-terminal domain (From Topology)T: Endolysin C-terminal domainF: GxGYxYP_N_1stECOD (1.6)
AGxGYxYP_N_2nde3sggA2 A: a/b three-layered sandwichesX: Endolysin C-terminal domain (From Topology)H: Endolysin C-terminal domain (From Topology)T: Endolysin C-terminal domainF: GxGYxYP_N_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.490 Alpha Beta Alpha-Beta Barrel TIM Barrel GxGYxYP glycoside hydrolase, C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF20958GxGYxYP third domain (GxGYxYP_N_3rd)GxGYxYP third domainThis entry represents a domain that is found repeated in three copies per protein and is likely to be involved in binding the bacterial cell wall. This domain is found in association with Pfam:PF14323. Domain
PF20957GxGYxYP_N second domain (GxGYxYP_N_2nd)GxGYxYP_N second domainThis entry represents a domain that is found repeated in three copies per protein and is likely to be involved in binding the bacterial cell wall. This domain is found in association with Pfam:PF14323. Domain
PF14323GxGYxYP putative glycoside hydrolase C-terminal domain (GxGYxYP_C)GxGYxYP putative glycoside hydrolase C-terminal domainThis family carries a characteristic sequence motif, GxGYxYP, and is a putative glycoside hydrolase. This domain is found in association with Pfam:PF16216. Associated families are sugar-processing domains. Domain
PF16216GxGYxYP_N 1st domain (GxGYxYP_N)GxGYxYP_N 1st domainThis entry represents a domain that is found repeated in three copies per protein and is likely to be involved in binding the bacterial cell wall. This domain is found in association with Pfam:PF14323. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR048310GxGYxYP putative glycoside hydrolase, second N-terminal domainDomain
IPR025832GxGYxYP putative glycoside hydrolase, C-terminalDomain
IPR032626GxGYxYP putative glycoside hydrolase, first N-terminal domainDomain
IPR048309GxGYxYP putative glycoside hydrolase, third N-terminal domainDomain
IPR038410GxGYxYP putative glycoside hydrolase, C-terminal domain superfamilyHomologous Superfamily