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3SBS
|
pdb_00003sbs
Crystal structure of Aar2 protein
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification
SCOP-e Database Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
Provenance Source (Version)
A
d3sbsa2
All alpha proteins
alpha-alpha superhelix
U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain-like
U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain-like
U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain
Baker's yeast
(
Saccharomyces cerevisiae S288C
) [TaxId:
559292
],
SCOPe (2.08)
A
d3sbsa1
All beta proteins
U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like
U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like
U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like
U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain
Baker's yeast
(
Saccharomyces cerevisiae S288C
) [TaxId:
559292
],
SCOPe (2.08)
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
Arm,APC_rep
e3sbsA3
A: alpha bundles
X: Subtilisin-like
H: Subtilisin-like
T: Subtilisin-like
F: Arm,APC_rep
ECOD (develop294)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
2.60.34.20
Mainly Beta
Sandwich
Substrate Binding Domain Of DNAk
Chain A, domain 1
CATH (4.3.0)
A
1.25.40.550
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Aar2, C-terminal domain-like
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF05282
AAR2 C-terminal repeat region (AAR2)
AAR2 C-terminal repeat region
-
Repeat
A
PF20981
AAR2 N-terminal domain (AAR2_1st)
AAR2 N-terminal domain
This family consists of several eukaryotic AAR2-like proteins. The yeast protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [1]. This entry represents the N-terminal Ig-like domain.
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
A1 cistron-splicing factor AAR2
-
ribonucleoprotein complex biogenesis
RNA metabolic process
mRNA processing
spliceosomal tri-snRNP complex assembly
protein-RNA complex assembly
cellular component organization
cellular component biogenesis
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
protein-RNA complex organization
cellular component assembly
protein-containing complex assembly
cellular component organization or biogenesis
ribonucleoprotein complex biogenesis
RNA metabolic process
mRNA processing
spliceosomal tri-snRNP complex assembly
protein-RNA complex assembly
cellular component organization
cellular component biogenesis
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
protein-RNA complex organization
cellular component assembly
protein-containing complex assembly
cellular component organization or biogenesis
RNA processing
RNA splicing
protein-containing complex organization
spliceosomal snRNP assembly
primary metabolic process
gene expression
nucleobase-containing compound biosynthetic process
mRNA metabolic process
macromolecule biosynthetic process
nucleic acid metabolic process
biosynthetic process
RNA splicing, via transesterification reactions
mRNA splicing, via spliceosome
cellular process
metabolic process
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
macromolecule metabolic process
Less
U5 snRNP
membrane-bounded organelle
spliceosomal snRNP complex
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
Sm-like protein family complex
intracellular membrane-bounded organelle
intracellular organelle
cellular anatomical structure
small nuclear ribonucleoprotein complex
organelle
ribonucleoprotein complex
U5 snRNP
membrane-bounded organelle
spliceosomal snRNP complex
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
Sm-like protein family complex
intracellular membrane-bounded organelle
intracellular organelle
cellular anatomical structure
small nuclear ribonucleoprotein complex
organelle
ribonucleoprotein complex
cytoplasm
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR033648
AAR2, C-terminal domain
Domain
A
IPR038514
AAR2, C-terminal domain superfamily
Homologous Superfamily
A
IPR038516
AAR2, N-terminal domain superfamily
Homologous Superfamily
A
IPR033647
AAR2, N-terminal
Domain
A
IPR007946
A1 cistron-splicing factor, AAR2
Family
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