The crystal structure of GxGD membrane protease FlaK
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Peptidase_A24,Arc_PepC_II | e3s0xA1 | A: a/b three-layered sandwiches | X: DNA methylase specificity domain | H: DNA methylase specificity domain | T: DNA methylase specificity domain | F: Peptidase_A24,Arc_PepC_II | ECOD (v294.1) |
| B | Glyco_hydro_3 | e3s0xB1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Glyco_hydro_3 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.20.120.1220 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
| A | 6.10.250.3240 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
| B | 1.20.120.1220 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Peptidase A24B, FlaK domain protein |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009655 | Preflagellin peptidase, C-terminal | Domain | |
| IPR052218 | Archaeal Preflagellin Peptidase | Family | |
| IPR000045 | Prepilin type IV endopeptidase, peptidase domain | Domain | |
| IPR054964 | Preflagellin peptidase | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Peptidase AD | Type IV leader peptidase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Intramembrane Proteases | FlaK preflagellin aspartyl protease |
