3RJT | pdb_00003rjt

Crystal structure of lipolytic protein G-D-S-L family from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3rjtb1	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 ) [TaxId: 521098 ],	SCOPe (2.08)
B	d3rjtb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 ) [TaxId: 521098 ],	SCOPe (2.08)
A	d3rjta1	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 ) [TaxId: 521098 ],	SCOPe (2.08)
A	d3rjta2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 ) [TaxId: 521098 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Radical_SAM	e3rjtB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Radical_SAM	ECOD (v294.1)
A	TetR_N	e3rjtA1	A: a/b three-layered sandwiches	X: Glucose permease domain IIB-like	H: eIF1-like	T: eIF1-like	F: TetR_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)
A	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13472	GDSL-like Lipase/Acylhydrolase family (Lipase_GDSL_2)	GDSL-like Lipase/Acylhydrolase family	This family of presumed lipases and related enzymes are similar to Pfam:PF00657.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Lipolytic protein G-D-S-L family	lysophospholipase A1 activity phospholipase activity hydrolase activity, acting on ester bonds glycerophospholipase activity carboxylic ester hydrolase activity A1-type glycerophospholipase activity hydrolase activity phosphatidylcholine lysophospholipase A1 activity catalytic activity lipase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR013830	SGNH hydrolase-type esterase domain	Domain
A, B	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
A, B	IPR051532	Diverse Ester Hydrolysis Enzymes	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210
A, B	MSE	Parent Component: MET RESID: AA0205

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.